LWGreece Research Infrastructure Data Services

Research Infrastructure Data Services

The Hellenic Centre for Marine Research (HCMR) is working on the enhancement of the LifeWatchGreece Research Infrastructure (LWGreece RI) Data Services. The purpose of these activities is to provide end-users with a user-friendly service, enabling them to search and access (meta)data from two sources, Micro-CT vLab and IPT MedOBIS.

The activities are divided into three major categories:

(a) design and implementation of facilities for harvesting data

(b) data modelling and semantic data transformation activities, and

(c) updates and enhancements of the Data Services of the LWGreece RI.

More details of these activities are given below:

A set of supporting services and tools have been designed and implemented, able to harvest resources from two databases: (a) the IPT MedOBIS database and (b) the Micro-CT vLab database. A harvesting mechanism has been implemented that exports information from the above-mentioned sources, which are subsequently transformed and added to LWGreece repositories (see point below). 

After harvesting data from the sources described above, they needed to be homogenised before depositing them in the repositories of the LWGreece infrastructure. To this end, a set of mappings was implemented, using X3ML Specification Language,[1] that describes the transition of the harvested resources from their original schemata, to a common target top-level ontology MarineTLO.[2] The result was a set of ontological-based descriptions regarding MarineTLO that were inserted into the LWGreece semantic repositories.

Several endpoints of the Data Services were updated, so that they can properly retrieve information from LWGreece semantic repositories. In addition, we have enhanced the services based on the findings and the updated modelling that emerged from the two new sources that were used (i.e., IPT MedOBIS, micro-CT vLab). 

It is worth mentioning that the Data Services (along with all the other available vLabs) is now available through the Metadata Catalogue of LifeWatch ERIC. Allowing this central catalogue to be machine-interoperable is necessary for the population of the catalogue, and implements the FAIR principles and EOSC-interoperability, promoted through ENVRI-FAIR WP9 and WP11.


[1] Marketakis, Y., Minadakis, N., Kondylakis, H., Konsolaki, K., Samaritakis, G., Theodoridou, M., Flouris, G. and Doerr, M., 2017. X3ML mapping framework for information integration in cultural heritage and beyond. International Journal on Digital Libraries, 18(4), pp. 301-319.

[2] Tzitzikas, Y., Allocca, C., Bekiari, C., Marketakis, Y., Fafalios, P., Doerr, M., Minadakis, N., Patkos, T. and Candela, L., 2016. Unifying heterogeneous and distributed information about marine species through the top level ontology MarineTLO. Program, 50(1), pp. 16-40.

Policy Relevance and Uptake

  • End of May 2026 – Policy-brief to demonstrate the application of habitat-based mapping in supporting EU strategies (e.g., Biodiversity Strategy, Nature Restoration Law).

Mapping user requirements

  • End of January 2025 – Catalogue of services already available in LifeWatch ERIC or research lines addressing ecological responses to climate change;
  • February 2025 (TBD) – Online working table on setting priorities, timeline and milestones for the mapping service and model requirements by scientists and science stakeholders.
Greece

The Greek National Distributed Centre is funded by the Greek General Secretariat of Research and Technology and is coordinated by the Institute of Marine Biology, Biotechnology and Aquaculture of the Hellenic Centre for Marine Research, in conjunction with 47 associated partner institutions.

To know more about how Greece contributes to LifeWatch ERIC, please visit our dedicated webpage.

Italy

The Italian National Distributed Centre is led and managed by the Italian National Research Council (CNR) and is coordinated by a Joint Research Unit, currently comprising 35 members. Moreover, Italy hosts one of the LifeWatch ERIC Common Facilities, the Service Centre.

To know more about how Italy contributes to LifeWatch ERIC, please visit our dedicated webpage.

Netherlands

The Dutch National Distributed Centre is hosted by the Faculty of Science of the University of Amsterdam. Moreover, The Netherlands hosts one of the LifeWatch ERIC Common Facilities, the Virtual Laboratory and Innovation Centre.

To know more about how The Netherlands contributes to LifeWatch ERIC, please visit our dedicated webpage.

Portugal

The Portuguese National Distributed Centre is managed by PORBIOTA, the Portuguese e-Infrastructure for Information and Research on Biodiversity. Led by BIOPOLIS/CIBIO-InBIO – Research Centre in Biodiversity and Genetic Resources, PORBIOTA connects the principal Portuguese research institutions working in biodiversity.

To know more about how Portugal contributes to LifeWatch ERIC, please visit our dedicated webpage.

Slovenia

The Slovenian National Distributed Centre is led by the Research Centre of the Slovenian Academy of Sciences and Arts (ZRC SAZU). It focuses on the development of technological solutions in the field of biodiversity and socio-ecosystem research.

To know more about how Slovenia contributes to LifeWatch ERIC, please visit our dedicated webpage.

Spain

The Spanish National Distributed Centre is supported by the Ministry of Science, Innovation and Universities, the Regional Government of Andalusia and the Guadalquivir River Basin Authority (Ministry for Ecological Transition-MITECO). Moreover, Spain is the hosting Member State of LifeWatch ERIC, the location of its Statutory Seat & ICT e-Infrastructure Technical Office (LifeWatch ERIC Common Facilities). 

To know more about how Spain contributes to LifeWatch ERIC, please visit our dedicated webpage.

Bulgaria

The Bulgarian National Distributed Centre is represented by the  Agricultural University-Plovdiv.

To know more about how Bulgaria contributes to LifeWatch ERIC, please visit our dedicated webpage.

Implementing services

  • End of January 2025 – Internal distribution of a questionnaire on the most used/relevant model resources in the WG member research activity;
  • February 2025 (TBD) – Online working table on setting priorities, timeline and milestones for the mapping service and model requirements by scientists and science stakeholders.

Knowledge Exchange and Capacity Building

  • End of December 2025 – Create a shared repository of guidance documents, tools, templates, and data resources accessible to WG members and broader communities.

Organising WG workshops and conferences

  • End of January 2025 – Setting priority research lines and contributions to the BEeS 2025 LifeWatch Conference for the session on the “Ecological responses to climate change”;
  • March/April 2025 (TBD) – Workshop ‘Ecological modelling and eco-informatics to address functional responses of biodiversity and ecosystems to climate change’ co-organised with the University of Salento;
  • 30 June – 3 July 2025 – Participation to LifeWatch 2025 BEeS Conference on “Addressing the Triple Planetary Crisis”.

Fund raising

  • End of January 2025 – Establishing a WG Committee on scouting project application opportunities and fundraising.

Meetings, Webinars, International Conferences & Networking (2025/2026)

  • Organising and participating at discussions on emerging technologies in biodiversity monitoring;
  • Organising webinars on machine learning, eDNA analysis, and automated data collection;
  • Fostering collaboration between researchers, technologists, and decision-makers.

Collaborative Research & Case Studies (2025/2026)

  • Conducting pilot projects to test new monitoring methods;
  • Publishing scientific and popular science papers and reports on advancements in biodiversity assessment.

Data Standardisation & FAIR Principles Implementation (2025/2026)

  • Developing best practices for data curation and sharing;
  • Ensuring that biodiversity data aligns with FAIR (Findable, Accessible, Interoperable, Reusable) standards.

Development of VREs for Ecosystem Simulation (2026)

  • Creating virtual models of ecosystems to predict environmental changes;
  • Enhancing conservation strategies through AI-driven simulations.

Mapping Requirements and Gap Analysis

  • End of December 2025 – Catalogue of services already available in LifeWatch ERIC or research lines Ecosystem services mapping.

Methodological Alignment and Innovation

  • End of January 2026 – Online working table on mapping standards, classification systems, and indicators across members;
  • End of January 2026 – Catalogue of advanced techniques (e.g., remote sensing, GIS modelling, and machine learning) for scalable, habitat-based ecosystem service mapping;
  • End December 2026 – Methodological framework to support methodological innovation through joint development and testing of mapping approaches, especially linking ecosystem service supply and demand.
Belgium

The Belgian National Distributed Centre makes varied and complementary in-kind contributions to LifeWatch ERIC. These are implemented in the form of long-lasting projects by various research centres and universities distributed throughout the country and supported by each respective political authority.

To know more about how Belgium contributes to LifeWatch ERIC, please visit our dedicated webpage.