Frontiers Paper on Crustaceans Workflow

Crustaceans Workflow

A scientific paper about the LifeWatch ERIC Crustaceans Workflow was published on 4 January 2023 in Frontiers on Environmental Science, the community-driven and peer-reviewed research journals dedicated to making science open, so that scientists can collaborate better and innovate faster to deliver solutions that enable healthy lives on a healthy planet.

LifeWatch ERIC, the e-Science European infrastructure for biodiversity and ecosystem research, launched the Internal Joint Initiative in October 2019 on Non-indigenous Species and Invasive Alien Species (NIS-IAS) because they are considered one of the major drivers of biodiversity and ecosystem change. In this paper, the case study on the trophic biogeography of invasive crustaceans is presented, describing the procedures, resources, and analytical web services implemented in the Tesseract Virtual Research Environment to investigate the trophic habits of two invasive taxa by using carbon and nitrogen stable isotope data. The case study offers a number of analytical tools to determine the variability of the trophic position of invasive crustaceans in a spatially-explicit context and to model it as a function of relevant environmental predictors.

Literature-based stable isotope data of the Atlantic blue crab Callinectes sapidus and the Louisiana crayfish Procambarus clarkii were used to evaluate the functionalities and outcomes of the workflow. The results of the study reveal, both at population-scale and individual-scale, the existence of significant relationships between temperature related variables and the trophic positions of the two species. At relatively higher temperatures, omnivorous invaders occupy higher trophic levels in food webs and become more carnivorous, which in conditions of climate change is likely to increase their overall impact.

Moreover, the functionalities of the Crustacean Workflow within the Tesseract VRE offered by LifeWatch ERIC can be adapted to a wide range of species, and will be further improved to support researchers in monitoring and predicting trophic-related impacts of NIS-IAS. The VRE will also support policymakers and stakeholders in the implementation of effective management and control measures to limit the negative effects of bioinvaders in recipient environments.

Read or download the whole paper here (Di Muri et al).

Click here for links to two related papers:
An individual based-based dataset of carbon and nitrogen isotopic data of Callinectes sapidus in invaded Mediterranean waters
Individual and population-scale carbon and nitrogen isotopic values of Procambarus clarkii in invaded freshwater systems

Bulgaria

The Bulgarian National Distributed Centre is represented by the  Agricultural University-Plovdiv.

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Spain

The Spanish National Distributed Centre is supported by the Ministry of Science, Innovation and Universities, the Regional Government of Andalusia and the Guadalquivir River Basin Authority (Ministry for Ecological Transition-MITECO). Moreover, Spain is the hosting Member State of LifeWatch ERIC, the location of its Statutory Seat & ICT e-Infrastructure Technical Office (LifeWatch ERIC Common Facilities). 

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Slovenia

The Slovenian National Distributed Centre is led by the Research Centre of the Slovenian Academy of Sciences and Arts (ZRC SAZU). It focuses on the development of technological solutions in the field of biodiversity and socio-ecosystem research.

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Portugal

The Portuguese National Distributed Centre is managed by PORBIOTA, the Portuguese e-Infrastructure for Information and Research on Biodiversity. Led by BIOPOLIS/CIBIO-InBIO – Research Centre in Biodiversity and Genetic Resources, PORBIOTA connects the principal Portuguese research institutions working in biodiversity.

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Netherlands

The Dutch National Distributed Centre is hosted by the Faculty of Science of the University of Amsterdam. Moreover, The Netherlands hosts one of the LifeWatch ERIC Common Facilities, the Virtual Laboratory and Innovation Centre.

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Italy

The Italian National Distributed Centre is led and managed by the Italian National Research Council (CNR) and is coordinated by a Joint Research Unit, currently comprising 35 members. Moreover, Italy hosts one of the LifeWatch ERIC Common Facilities, the Service Centre.

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Greece

The Greek National Distributed Centre is funded by the Greek General Secretariat of Research and Technology and is coordinated by the Institute of Marine Biology, Biotechnology and Aquaculture of the Hellenic Centre for Marine Research, in conjunction with 47 associated partner institutions.

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Belgium

The Belgian National Distributed Centre makes varied and complementary in-kind contributions to LifeWatch ERIC. These are implemented in the form of long-lasting projects by various research centres and universities distributed throughout the country and supported by each respective political authority.

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