BioDT presents the new Digital Twin prototype to preserve honey bees’ performance and environmental biodiversity

honey bees

Honey bees (Apis mellifera) are crucial pollinators and producers. Despite their key role in agriculture, food production and security, and ultimately in human health and ecosystem well-being, they face multiple threats: habitat loss, degradation and fragmentation, pollution, pesticides, pests and pathogens, changes in land use and climate change impacts are putting at risk their survival, causing their decline worldwide. 

On May 25, BioDT presented its prototype Digital Twin (pDT) for Pollinators during the online event Biodiversity in Focus. By combining real-world data with advanced simulation techniques, the new prototype provides practical insights into honey bee performance and honey production by evaluating landscape quality. The goal of the BioDT project – in which LifeWatch ERIC is one of the partners – is to push the current boundaries of predictive understanding of biodiversity dynamics by developing a Digital Twin that provides advanced modelling, simulation, and prediction capabilities.

The DT for Pollinators aims to address honey bees’ challenges, such as intensive agriculture, diseases, and fluctuations in nectar and pollen availability. Based on the BEEHAVE model, this prototype supports use cases involving large input data, like analysing datasets from multiple countries. 

The health of honey bees depends on their environments, where consistent availability of nectar and pollen is vital, particularly during times when mass-flowering crops such as oilseed rape are not in bloom.

This Digital Twin prototype represents a fusion of advanced technology and practicality to allow a generic assessment of agricultural areas for honey bee health, says Dr Jürgen Groeneveld from the Helmholtz Centre for Environmental Research – UFZ in Leipzig. By providing tools that are accessible, scalable, and adaptable, we aim to empower biodiversity researchers and conservationists in their mission to protect our planet’s vital ecosystems.

On the technical side, the prototype relies on a solid foundation. Custom scripts specify input data and transform it into readable input files. Researchers can deploy all necessary software components into a Docker container image on the LUMI supercomputer and cloud platforms. For more information on its development, you can consult the repository page on GitHub.

In future updates, BioDT plans to include land cover data, land cover types converted into nectar and pollen resources, and weather data, adapting it for diverse geographic areas. This way, researchers and conservationists worldwide could leverage BioDT’s capabilities in their biodiversity conservation efforts. Jesse Harrison, Developer Manager at CSC and former Project Manager of BioDT, highlighted the Pollinators DT’s potential for biodiversity conservation and announced that further versions of this prototype will expand BioDT’s mission beyond honey bee performance. He said to envision the development of further prototype Digital Twins, each addressing critical biodiversity challenges.

Test the first BioDT prototype Digital Twin on pollinator! 
Source: BioDT press release – To learn more about the Digital Twin for Pollinators and to test it, please visit this page: https://biodt.eu/news/first-operational-prototype-digital-twin-biodt

Identify community needs and promote FAIR data exchange for agroecology

  • End of 2027
    • Identify the demand from researchers and living labs for interoperable indicators, reproducible workflows, and decision-support tools that connect biophysical, ecological and socio-economic dimensions.

Strengthen collaboration and impact

  • Permanent activity

    • Coordinate collaboration among Distributed Centres, Living Labs and research communities to support the development of agroecology services within LifeWatch ERIC;

  • End of 2027

    • Improve comparability of research outputs, accelerate adoption of services, and foster co-created solutions for researchers, farmers, advisors and policy makers.

  • Permanent activity

    • Facilitate joint initiatives, project proposals and knowledge exchange to ensure sustained service development and long-term impact.

Support the development of digital agroecology services

  • June 2026

    • Deployment of EDDAn​ data space for Agrifood sector in Andalusia; Adaptation of TITAN workflow platform and related KHAOS tools to serve as a reproducible, trustworthy analysis layer within EDDAn Data Space;

  • September 2026

    • An AGROSERV TransNationalAccess project is currently underway by LifeWatch ERIC and AnaEE ERIC to develop a VREfA (Virtual Research Environment for Agroecology). The project, led by UPO, will support the biophysical analysis of agroecosystems that are transitioning to agroecological management practices.

Advance agroecological research across scales

  • Permanent activity

    • Increase knowledge on ecological processes in agroecosystems, considering both relevant spatial scales and long-term changes.

  • End of 2027

    • Promote the advancement of Landscape Agroecology, exploring new ways of functional integration of different land and livestock uses to increase territorial efficiency and generate landscape mosaics well-endowed with biodiversity and ecosystem services.

  • End of 2027

    • Contribute to the design of agroecological food systems at local and bioregional levels to meet population food demands.

  • End of 2028

    • Research on the contribution of agroecological management to combating climate emergencies, both in terms of mitigation (sequestration) and adaptation to adverse climatic conditions at both farm and landscape level.

Community engagement and application integration

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  • July 2026–December 2027​
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  • 2028​
    • consolidation of collaborations, cross-infrastructure initiatives, and dissemination of impact- oriented outputs.

Bioinformatics services and infrastructure

  • March–September 2026​
    • assessment of computational needs;
    • deployment of Virtual Machines and Galaxy Instances;
    • integration of workflows for eDNA, DNA metabarcoding, and shotgun metagenomics.
  • October 2026–June 2027​
    • release and optimization of reproducible workflows;
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Experimental design and extraction protocols

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    • Kick-off meeting;
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    • Comparative evaluation of sampling strategies and sequencing approaches;
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Integrated Data-to-Model Workflows

  • End of December 2026 – At least 5 workflows for data-model integration developed and published
  • End of February 2027 – At least 5 workflows for policy-relevant outputs developed and published

Environmental Data Mapping

  • End of May 2026 – Core environmental data mapped as a list
  • End of June 2026 – Cross-comparison with existing LifeWatch catalogue done

Cross-Disciplinary Lexicon

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Policy Relevance and Uptake

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Knowledge Exchange and Capacity Building

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Methodological Alignment and Innovation

  • End of January 2026 – Online working table on mapping standards, classification systems, and indicators across members;
  • End of January 2026 – Catalogue of advanced techniques (e.g., remote sensing, GIS modelling, and machine learning) for scalable, habitat-based ecosystem service mapping;
  • End December 2026 – Methodological framework to support methodological innovation through joint development and testing of mapping approaches, especially linking ecosystem service supply and demand.

Mapping Requirements and Gap Analysis

  • End of December 2025 – Catalogue of services already available in LifeWatch ERIC or research lines Ecosystem services mapping.

Development of VREs for Ecosystem Simulation (2026)

  • Creating virtual models of ecosystems to predict environmental changes;
  • Enhancing conservation strategies through AI-driven simulations.

Data Standardisation & FAIR Principles Implementation (2025/2026)

  • Developing best practices for data curation and sharing;
  • Ensuring that biodiversity data aligns with FAIR (Findable, Accessible, Interoperable, Reusable) standards.

Collaborative Research & Case Studies (2025/2026)

  • Conducting pilot projects to test new monitoring methods;
  • Publishing scientific and popular science papers and reports on advancements in biodiversity assessment.

Meetings, Webinars, International Conferences & Networking (2025/2026)

  • Organising and participating at discussions on emerging technologies in biodiversity monitoring;
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Fund raising

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Organising WG workshops and conferences

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  • March/April 2025 (TBD) – Workshop ‘Ecological modelling and eco-informatics to address functional responses of biodiversity and ecosystems to climate change’ co-organised with the University of Salento;
  • 30 June – 3 July 2025 – Participation to LifeWatch 2025 BEeS Conference on “Addressing the Triple Planetary Crisis”.

Implementing services

  • End of January 2025 – Internal distribution of a questionnaire on the most used/relevant model resources in the WG member research activity;
  • February 2025 (TBD) – Online working table on setting priorities, timeline and milestones for the mapping service and model requirements by scientists and science stakeholders.

Mapping user requirements

  • End of January 2025 – Catalogue of services already available in LifeWatch ERIC or research lines addressing ecological responses to climate change;
  • February 2025 (TBD) – Online working table on setting priorities, timeline and milestones for the mapping service and model requirements by scientists and science stakeholders.
Bulgaria

The Bulgarian National Distributed Centre is represented by the  Agricultural University-Plovdiv.

To know more about how Bulgaria contributes to LifeWatch ERIC, please visit our dedicated webpage.

Spain

The Spanish National Distributed Centre is supported by the Ministry of Science, Innovation and Universities, the Regional Government of Andalusia and the Guadalquivir River Basin Authority (Ministry for Ecological Transition-MITECO). Moreover, Spain is the hosting Member State of LifeWatch ERIC, the location of its Statutory Seat & ICT e-Infrastructure Technical Office (LifeWatch ERIC Common Facilities). 

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Slovenia

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Portugal

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Italy

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Greece

The Greek National Distributed Centre is funded by the Greek General Secretariat of Research and Technology and is coordinated by the Institute of Marine Biology, Biotechnology and Aquaculture of the Hellenic Centre for Marine Research, in conjunction with 47 associated partner institutions.

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Belgium

The Belgian National Distributed Centre makes varied and complementary in-kind contributions to LifeWatch ERIC. These are implemented in the form of long-lasting projects by various research centres and universities distributed throughout the country and supported by each respective political authority.

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