The LifeWatch ERIC training platform will continue to provide public access to the BiCIKL project training materials

BiCIKL project

After three years of advancing a cultural shift in identifying, linking, integrating, and re-using biodiversity data throughout the research cycle, the BiCIKL project is coming to a close. 

One of the key outputs of the BiCIKL project is the Biodiversity Knowledge Hub (BKH). Developed as a one-stop portal for understanding the interconnected landscape of European biodiversity research infrastructures, it acts as a knowledge broker for users who want to navigate and access open and FAIR biodiversity data, guidelines, tools, and services. 

Additionally, the BiCIKL project’s partners created training materials and detailed instructions to help users make the most of the linked services and access biodiversity data found in published literature. The training resources are divided into three courses to cater to users with different backgrounds and expertise, enabling them to begin with the fundamentals or concentrate on specific modules as required:

  • The Introduction to BKH course presents the BKH portal and helps users understand the functions offered by BKH and its associated data services.
  • The BKH Services course provides an overview of the services available in the BKH, and explains how to use each of them, with each service having its dedicated module, and offering best practices and recommendations for their use.
  • The Data Liberation and Publishing Tools Course is an advanced training course focusing on a more in-depth version of the multiple services featured on the BKH. This detailed module focuses on data liberation and publishing tools.

The courses, fully open and accessible to everyone, offer training materials that benefit various stakeholders. Research institutions can learn how different research infrastructures connect their data and add value for new user communities. Biodiversity researchers can explore new data sources, reduce errors in taxonomic name usage, and conduct complex queries. Taxonomists can compare name usage across checklists, access newly published information on a taxon, and create custom taxonomies. Biodiversity informaticians can discover data links, access guidance on identifiers and APIs, and compile complex datasets. Managers of biological collections can understand how their data is utilized and access linked data such as taxon names and sequences. Additionally, publishers can obtain guidelines, best practices, and tools for semantic publishing and implement persistent identifiers and workflows for Linked Open Data.

LifeWatch ERIC, via its Training Platform, will continue to host publicly accessible training materials even after the project’s conclusion, thus ensuring their long term sustainability. To learn more, please visit our Training Platform: https://training.lifewatch.eu/international-projects/resources/?category=32

RESTORE4Cs at the 14th European Conference on Ecological Restoration 

SERE 2024

RESTORE4Cs –  the EU-funded project on coastal wetland restoration in which LifeWatch ERIC is leading communications and dissemination – will participate in the 14th European Conference on Ecological Restoration (SERE 2024) from 26 to 30 August 2024, in Tartu, Estonia. Representatives from the project’s coordinator, the University of Aveiro, will be present as speakers as the scientific focal point of the project. LifeWatch ERIC will also be present with a booth to showcase the project to the participants.

About SERE 2024

SERE 2024 is a biennial international conference organised by the European Chapter of the Society for Ecological Restoration (SER) in Europe. Scientists, practitioners, and policy-makers of ecological restoration will gather in Tartu to share knowledge and discuss the future of European nature. RESTORE4Cs will hold a session on Wetland Restoration alongside its Sister Projects, ALFAwetlands, REWET and WET HORIZONS.

SERE 2024 will bring together stakeholders from across Europe to collaborate on effective approaches for the long-term recovery of nature. This event will serve as a platform for sharing ideas, knowledge, and experiences restoring various ecosystems, including wetlands, grasslands, forests, rivers, agroecosystems, urban areas, and marine ecosystems. The sessions will cover the theory and practical applications of ecological restoration and the socioeconomic and political contexts. There will be a specific focus on discussions related to developing national restoration plans in line with the new EU law.

To learn more about RESTORE4Cs’ participation at SERE 2024, please visit this page: https://www.restore4cs.eu/restore4cs-at-sere-2024/.

About RESTORE4Cs and The Sister Projects

The restoration of wetlands is crucial for climate change mitigation. The Four EU-funded projects (RESTORE4Cs, ALFAwetlands, REWET and WET HORIZONS) are working together to restore wetlands and enhance their long-term mitigation capabilities. They will outline their initiatives in a special session and presentations from open abstract submissions. Their session will also include an interactive segment to create a roadmap for expediting restoration opportunities and maximising impact.

RESTORE4Cs is committed to supporting the implementing of Climate and Biodiversity policies within the European Green Deal through various initiatives. These include gathering data on restoration and land use management actions, upscaling models and integrative assessment tools, structuring a European Community of Practice (ECoP), and co-designing a multi-actor approach.

BioDT presents the new Digital Twin prototype to preserve honey bees’ performance and environmental biodiversity

honey bees

Honey bees (Apis mellifera) are crucial pollinators and producers. Despite their key role in agriculture, food production and security, and ultimately in human health and ecosystem well-being, they face multiple threats: habitat loss, degradation and fragmentation, pollution, pesticides, pests and pathogens, changes in land use and climate change impacts are putting at risk their survival, causing their decline worldwide. 

On May 25, BioDT presented its prototype Digital Twin (pDT) for Pollinators during the online event Biodiversity in Focus. By combining real-world data with advanced simulation techniques, the new prototype provides practical insights into honey bee performance and honey production by evaluating landscape quality. The goal of the BioDT project – in which LifeWatch ERIC is one of the partners – is to push the current boundaries of predictive understanding of biodiversity dynamics by developing a Digital Twin that provides advanced modelling, simulation, and prediction capabilities.

The DT for Pollinators aims to address honey bees’ challenges, such as intensive agriculture, diseases, and fluctuations in nectar and pollen availability. Based on the BEEHAVE model, this prototype supports use cases involving large input data, like analysing datasets from multiple countries. 

The health of honey bees depends on their environments, where consistent availability of nectar and pollen is vital, particularly during times when mass-flowering crops such as oilseed rape are not in bloom.

This Digital Twin prototype represents a fusion of advanced technology and practicality to allow a generic assessment of agricultural areas for honey bee health, says Dr Jürgen Groeneveld from the Helmholtz Centre for Environmental Research – UFZ in Leipzig. By providing tools that are accessible, scalable, and adaptable, we aim to empower biodiversity researchers and conservationists in their mission to protect our planet’s vital ecosystems.

On the technical side, the prototype relies on a solid foundation. Custom scripts specify input data and transform it into readable input files. Researchers can deploy all necessary software components into a Docker container image on the LUMI supercomputer and cloud platforms. For more information on its development, you can consult the repository page on GitHub.

In future updates, BioDT plans to include land cover data, land cover types converted into nectar and pollen resources, and weather data, adapting it for diverse geographic areas. This way, researchers and conservationists worldwide could leverage BioDT’s capabilities in their biodiversity conservation efforts. Jesse Harrison, Developer Manager at CSC and former Project Manager of BioDT, highlighted the Pollinators DT’s potential for biodiversity conservation and announced that further versions of this prototype will expand BioDT’s mission beyond honey bee performance. He said to envision the development of further prototype Digital Twins, each addressing critical biodiversity challenges.

Test the first BioDT prototype Digital Twin on pollinator! 
Source: BioDT press release – To learn more about the Digital Twin for Pollinators and to test it, please visit this page: https://biodt.eu/news/first-operational-prototype-digital-twin-biodt

RESTORE4Cs 4th General Assembly

restore4cs general assembly

From 27 to 30 May, the RESTORE4Cs 4th General Assembly took place at the University of Valencia in Spain. The Assembly included discussions on project expectations, policy roadmaps, data repositories and more.

RESTORE4C aims to assist in implementing Climate and Biodiversity policies under the European Green Deal by collecting data on restoration and land use management, developing integrated assessment tools, creating a European Community of Practice (ECoP), and collaborating on a multi-actor approach.

Prof. Joaquin Baixeras from the University of Valencia opened the meeting, followed by Case Pilot representatives discussing project expectations and interactions. As part of the project, RESTORE4Cs has identified six Case Pilots, including coastal wetland ecosystems of different conservation statuses and types of restoration actions. These sites provide a good geographical representation of Europe and its biogeographical regions: Mediterranean, Atlantic, Baltic and the Black Sea. The other presentations focused on policy roadmaps, analysis methodology, models, and scenarios.

On 28 May, the European Community of Practice for Wetlands Restoration launched its roadmap. The meeting included communication updates, the launch of a documentary trailer, the finalisation of the filming schedule, stakeholder interviews, fieldwork and laboratory analyses, and the presentation of project information layers.

On the last day of the RESTORE4Cs 4th General Assembly, the consortium visited the local Case Pilot, Marjal dels Moros, and saw the project’s sampling zone. They also enjoyed visiting the Albufera Natural Park and a boat ride on the Albufera Lake. To learn more, please visit: https://www.restore4cs.eu/restore4cs-4th-general-assembly/

BioDT Annual Meeting 2024: Shaping the Future of Biodiversity Research

BioDT Annual Meeting

LifeWatch ERIC participated in the 2024 Annual Meeting of the Biodiversity Digital Twin (BioDT) project, which took place on 11-12 June 2024 at the Helmholtz Centre for Environmental Research (UFZ) in Leipzig, Germany. The meeting had a hybrid format, allowing both in-person and remote participation.

The meeting covered the operational models of pDTs (physical Digital Twins) and sustainable pathways beyond the project’s lifecycle. It also discussed outreach, promotion, and training strategies for pDTs, as well as a Winter/Spring School that will take place most likely at the end of February 2025.

Additionally, the BioDT Annual Meeting was an occasion to share and validate progress of the technical architecture of the BioDT project as a whole and the related app, to discuss modelling and embedding scientific models into digital twins focusing on biodiversity, and to analyse data streams aligned with FAIR principles.

To learn more about the meeting, please visit the dedicated web page: https://ssl.eventilla.com/biodt2024

About the BioDT Project

BioDT represented a groundbreaking effort to redefine our predictive understanding of biodiversity dynamics. By leveraging advanced modelling, simulation, and prediction capabilities, BioDT aimed to provide critical infrastructure to drive long-term biodiversity research, facilitate science-driven policy, and enable rapid-response actions. 

Tracking biodiversity: it’s all about scale

Scale is a key ingredient when assessing and studying biodiversity: this is the video’s key message just released by the MARBEFES project, focusing on the Baltic Sea Broad Belt Transect (BBT). The video is the first “Meet the BBTs”video series that will be released to explore current challenges faced by biodiversity in Europe.

MARBEFES, the EU project in which LifeWatch ERIC is a partner, aims to identify the connections between marine biodiversity, ecosystem functioning, ecosystem services, and the resulting societal goods and benefits within coastal communities. The BBTs are the backbone of the MARBEFES research project, which aims to broaden our knowledge and understanding of biodiversity across Europe and beyond. This will help researchers gain a deeper insight into the changes occurring in our environment.

The video series serves as an initiative to heighten awareness about the critical significance of biodiversity in marine environments. 

In this episode, MARBEFES took a deep dive into the Gulf of Gdańsk (Zatoka Gdańska), coastal inlet of the Baltic Sea, in Northern Poland. These shallow waters are home to diverse species of fish, birds, and marine mammals, including the iconic grey seal. Unfortunately, the Gulf of Gdańsk is currently experiencing many pressures which are leading to habitat degradation and biodiversity loss: pollution (plastic, nutrients and various chemicals), intense shipping, large-scale tourism, increasing urbanisation, coastal erosion, are all putting at risk this key and fragile habitat, and climate change is also taking its toll on the area.

The Institute of Oceanology of the Polish Academy of Sciences (IO PAN) is responsible for data collection and analysis in the Gulf of Gdańsk BBT. Thanks to the activities developed within MARBEFES project, researchers can determine which actions need to be taken to protect this key area. The video, narrated by Jan Marcin Węsławski, marine ecologist at The Institute of Oceanology of the Polish Academy of Sciences (IO PAN), highlights the significance of studying biodiversity at various levels. At the smallest scale, microorganisms inhabit the beach sand. For these organisms, a one-square metre sample of the seabed in Sopot is adequate to represent the diversity of microorganisms across the Baltic region. At a medium scale, macrofauna, such as crustaceans and molluscs, are a few centimetres in size. In this case, samples from a much larger region spanning several square kilometres are necessary to accurately represent the diversity of these species in a specific area. Things change again at the largest scale, with megafauna and top predators – large fish, seabirds, and sea mammals. These creatures are highly mobile and exist in low densities, necessitating the exploration of the whole region to capture the biodiversity at this scale accurately.

When studying our planet’s biodiversity, it’s crucial to observe the species-area curve for each organism scale separately. This curve shows the relationship between the area of a habitat and the number of species found within that area. It’s a vital tool for understanding and protecting biodiversity. MARBEFES addresses this and focuses on subtropical to subarctic regions to ensure a comprehensive understanding of biodiversity across the European domain.

To learn more about MARBEFES and to watch the video, please visit this page: https://marbefes.eu/article/discover-bbt-region-within-our-project-1-out-of-4-movies-3-steps-into-the-sea-baltic-bbt

LifeWatch ERIC attended the OSCARS kick-off meeting in Thessaloniki

The OSCARS kick-off meeting took place in Thessaloniki from 13 to 15 March. The event brought together the scientific communities of the five Science Clusters and all project partners to define the work plan for the first 12 months of the project. Our CEO, Christos Arvanitidis, attended the meeting.

The OSCARS project stands for Open Science Clusters’ Action for Research and Society. It brings together ESFRI and other world-class research infrastructures organised in five “Science Clusters”:

  • ENVRI-FAIR (environmental science)
  • EOSC-Life (life science)
  • ESCAPE (astronomy and particle physics)
  • PaNOSC (neutron and light source science)
  • SSHOC (social science and humanities)

These clusters have collaborated over the last four years to enhance the efficiency and productivity of researchers by providing open data services and infrastructures for discovering, accessing, and reusing data.

The event began with a joint meeting of the consortia of two EU Science Cluster-led projects, OSCARS and EVERSE. Members discussed areas of cooperation and planned common activities.

The Science Cluster coordinators described the status of their work and plans for their cluster’s competence centres and virtual Research Environments (VREs) and the benefits of EOSC for their cluster. In the afternoon, mixed groups worked on detailed work plans for Competence Centres and VREs and potential cooperation areas with other projects and initiatives. 

The last day was dedicated to the launch of the Open Call for Open Science projects. The Call aims to support researchers involved in open data research projects that promote sharing research data and results based on FAIR principles. Proposals developing services or tools enabling open research and encouraging open science practice are eligible. For more information on the Call, please visit this page: https://oscars-project.eu/oscars-first-open-call.

About the project

The OSCARS project aims to consolidate the accomplishments of the five EOSC projects into long-lasting interdisciplinary services and working practices. In addition, it also seeks to lead in engaging and encouraging the participation of diverse research communities in the European Open Science Cloud (EOSC) by developing innovative open science projects. This goal is to promote the adoption of FAIR-data-intensive research practices across the European Research Area (ERA).

The ENVRI-Hub NEXT project has kicked off

The ENVRI-Hub NEXT project, of which LifeWatch ERIC is a consortium member, kicked off on February 1. The project builds upon the solid conceptual and technical foundation established by the ENVRI-Hub. The consortium comprises 21 partners and is attending a face-to-face meeting at the EGI Foundation in Amsterdam Science Park from February 6 to 8.

ENVRI-Hub NEXT aims to expand multidisciplinary environmental sciences by fostering operational synergies between environmental research infrastructures. The project leverages complementarities in data and service provision, enhancing the integration of cutting-edge information technology. It contributes to a more integrated, productive, and globally competitive ENVRI Science Cluster. The project is set to run until January 2027, contributing to the European Open Science Cloud. ENVRI-Hub NEXT also promotes collaboration across environmental research infrastructures.

LifeWatch ERIC is actively contributing to addressing the growing demand for environmental scientific knowledge. Our involvement aligns with the project’s goal of further integrating ENVRIs across subdomains (Atmosphere, Marine, Solid Earth, and Biodiversity/Ecosystems) and horizontally, with the e-infrastructures to leverage the full potential of the ENVRI cluster for integrated environmental research.

ENVRI-Hub NEXT aligns with the World Meteorological Organisation’s set of Essential Climate Variables (ECV) and global climate indicators to transform integrated Earth observation into a concept for a global climate observation system. These variables provide empirical evidence crucial for understanding and predicting climate evolution, guiding mitigation and adaptation.

Stay tuned for the launch of the ENVRI-Hub NEXT website.

RESTORE4Cs will participate in the Wetlands Conference 2024

RESTORE4Cs – the project participated by LifeWatch ERIC on modelling wetland restoration – will be present at the International Conference Conservation and Management of Wetlands to Tackle Climate Change from 14 to 16 February in Valencia, Spain.

The event is organised by Fundación Global Nature together with the University of Valencia, the Generalitat Valenciana and the City Council of Valencia. The aim is to share the latest scientific and technical advances on wetlands and climate change and their crucial role. The discussions will mainly centre around governance frameworks, opportunities for creating green jobs, and the pressing need for conservation efforts.

The conference on conservation and management of wetlands will bring together researchers, policymakers, representatives from international organisations, and other stakeholders. The goal is to facilitate international networking and serve as a platform for sharing scientific and technical advancements. Practitioners and managers will be equipped with the necessary tools for the sustainable management of wetlands. Also, this will enable them to make strategic decisions in the face of global change. This year’s focus is on the Mediterranean, which has depleted over 50% of its natural wetlands since 1970.

LifeWatch ERIC – who oversees the project’s communication and dissemination – will attend the conference in collaboration with MedWet. Other RESTORE4Cs partners, including the University of Aveiro, the University of Barcelona, the European Topic Centre at the University of Malaga, WasserCluster Lunz & the University of Vienna, and Tour du Valat, will also attend the conference as members of the scientific committee.

For those unable to attend in person, the conference will be available via streaming. For more information, please visit the official website. 

World Wetlands Day: How our wellbeing relies on restoring wetlands

world wetlands day

Today, 2 February 2024, is the 27th World Wetlands Day. As The World Health Organization said, our well-being depends on the stability of our climate, biodiversity, and sustainable development. Wetlands play a significant role in connecting all three factors.

For instance, just an acre of wetlands can hold up to 1.5 million gallons of floodwater, protecting coastal areas against natural disasters. Peatlands have the potential to store twice as much carbon as the global forest biomass. Wetlands also provide food for up to 4.5 billion people annually through the fish and rice paddies harvested from them.

On this day, we would like to draw attention to an article created as part of the RESTORE4Cs project, in which LifeWatch ERIC participate. The project aims to model wetland restoration for carbon pathways, climate change mitigation and adaptation, ecosystem services, and biodiversity co-benefits.

“For centuries people have found solace in remote wetlands, but there is now evidence that spending time in places like these actually helps boost mental health. This is particularly essential for the dark winter months in northern latitude”,

Mark Reed, Professor of Rural Entrepreneurship at Scotland’s Rural College

Despite this history, we are now losing these ecosystems alarmingly. The 2018 Global Wetland Outlook from the Ramsar Convention revealed that one third of the wetlands have been lost globally since 1970, mainly to urbanization and agriculture. A key theme of World Wetlands Day 2024 is the need to act now, and Europe’s researchers believe we already have solutions to turn things around.

“I think global treaties and recent EU laws mean we’re in the right decade to restore these ecosystems”

Dania Abdul Malak, Director of European Topic Centre for Spatial Analysis and Synthesis at the University of Malaga

Nowadays there are policies that can really help reestablish their function, and make sure they can also provide ecosystem services. Restoring wetland ecosystems will become critical for a more sustainable climate, biodiversity and human wellbeing by 2030.

Matuesz Grygoruk, Professor at Warsaw University of Life Sciences’ (SGGW) Department of Hydrology, Meteorology and Water Management

Mateusz suggested prioritising wetland restoration as a central focus in determining environmental management actions. He argued that these efforts are crucial in restoring the functions of wetlands, which are irreplaceable through any other management measures.

Restoring wetlands can have significant benefits, such as improving their biodiversity, water storage capacity, and ability to sequester carbon in soil. WET HORIZONS, a sister project of RESTORE4Cs, aims to enhance wetlands restoration and support European wetland policy.

To learn more about RESTORE4Cs and their commitment to World Wetlands Day, visit this project page.