Second open access data paper published in the Biodiversity Data Journal

procambarus clarkii

The “LifeWatch ERIC Collection of Data and Services Papers” published in the Biodiversity Data Journal is dedicated to the resources and assets developed, upgraded and used during the implementation of the Internal Joint Initiative (IJI), our flagship project focused non-indigenous and invasive species (NIS). Following the debut paper “An individual-based dataset of carbon and nitrogen isotopic data of Callinectes sapidus in invaded Mediterranean waters” (Di Muri et al.) in January, a second open-access data paper in this series was published on 20 October 2022, entitled “Individual and population-scale carbon and nitrogen isotopic values of Procambarus clarkii in invaded freshwater ecosystems” (Di Muri et al.).

Freshwater ecosystems are amongst the most threatened habitats on Earth; nevertheless, they support about 9.5% of known global biodiversity while covering less than 1% of the globe’s surface. One such threat are NIS such as the Louisiana crayfish, Procambarus clarkii. Crayfish species are widely-distributed freshwater invaders and, while alien species introductions occur mostly accidentally, alien crayfish are often released deliberately into new areas for commercial purposes. Native to the south United States and north Mexico, P. clarkii has been introduced in Europe, Asia and Africa, having negative impacts in the majority of invaded habitats where it became dominant, meaning it had become essential to evaluate the ecological consequences and quantify its impact.

The paper presents two geo-referenced datasets of isotopic signatures of the Louisiana crayfish and its animal and vegetable prey in invaded inland and brackish waters. To the best of the authors’ knowledge, this effort represents the first attempt to collate in standardised datasets the sparse isotopic information of P. clarkii available in literature. The datasets provide a spatially explicit resolution of its trophic ecology and can be used to address a variety of ecological questions concerning its ecological impact on recipient aquatic food webs.

The research was carried out within the context of the IJI, more specifically the ‘Crustaceans Workflow’, one of the validation cases used to develop an interdisciplinary Virtual Research Environment that utilises disruptive technologies to deal with the impacts of NIS on native species, genetic diversity, habitats, ecosystem functioning and services, and to inform current practices in environmental management and policy implementation. Stay tuned for the next paper!


ACCESS THE PAPER HERE

LifeWatch ERIC in Meeting on Disruptive Technologies

Disruptive technologies

Tomorrow morning, on Wednesday 19 October, LifeWatch ERIC will have the opportunity to meet and establish relationships with other creators and promoters of disruptive technologies, at the online B2B meeting organised by PTE Disruptive of the Association of Science and Technology Parks of Spain (APTE) focused on opportunities in the biotech sector (in Spanish).

LifeWatch ERIC CTO, Juan Miguel González-Aranda, will present in a slot from 10:40 – 11:00 CEST. In his presentation, he will talk about the range of disruptive technologies used by LifeWatch ERIC – the virtual infrastructure available to anyone who wishes to support research on biodiversity and the valorisation of ecosystem services with reliable data. 

Other participants include: Felipe Romera, president of Malaga TechPark and APTE, who will present the Spanish Platform of Disruptive Technologies; María Angeles Ferré, responsible for scientific-technical thematic programmes at the State Research Agency, who will talk about the aid programmes; Gabriel Anzaldi Varas, director of technological scientific development at EURECAT, who will speak about digital-bio technological convergence and its applications; and Raquel Álvarez Fernández, head of statistics and intelligence at the Spanish Association of Biocompanies (AseBio), who will discuss business opportunities in the biotech sector. 

The meeting will also see presentations from three company representatives with practical examples on the use of disruptive technologies: Exheus CEO, Teresa Tarragó; Zymvol Biomodeling SL CTO Maria Fátima Lucas; and Honey.Ai COO Iratxe Perales. APTE is funded by Ministry of Science and Innovation of Spain through the AIE.

Interested persons are invited to register for the event using the form (in Spanish).

Bilateral meetings will be held after the presentations and will not be streamed.

Fortifying Spanish-Portuguese Cooperation on Technology for Research at IBERGRID 2022

IBERGRID 2022

IBERGRID 2022, the 11th Iberian Grid Conference, took place 10–13 October at the University of Algarve in Faro, Portugal. IBERGRID stands for the Iberian Grid Structure, federating computing and data resources across the Iberian area to support research and innovation. The theme of the conference was “Delivering Innovative Computing and Data Services for Research”, and LifeWatch ERIC had a strong presence at the event, with a presentation “EOSC Activities in the Environmental Sciences”  from ICT-Core e-Infrastructure Operations Coordinator Antonio José Sáenz on behalf of CEO Christos Arvanitidis and CTO Juan Miguel González-Aranda, as part of the EOSC tripartite event which took place on day 1, and a two-part workshop on “IBERLifeWatch” – focusing on a good practices approach for scientific, technology and innovation communities and on funding opportunities for Spanish-Portuguese cooperation on day 2 and day 4.

During the IBERLifeWatch workshop, LifeWatch ERIC was able to highlight its collaboration several prestigious research entities, with engaging presentations from representatives from FCTCSICMIRRI ERIC, the University of Huelva, the University of Granada, the FCCN UnitLIPGBIF, the Royal Botanical Garden of Madrid, the Spanish government, the Junta de Andalucía, the Interreg Spain-Portugal programme, the LIFE programme, Estacão Biológica de MértolaUniversity of PortoLeuphana Universität LüneburgADRAL, the University of Aveiro, the University of Minho and many more, as well as coordinators of the Spanish and Portuguese nodes of LifeWatch ERIC itself. State-of-the-art LifeWatch ERIC tools were presented, such as LifeBlock and Tesseract, alongside important ERDF projects in the region involving the participation of the infrastructure, such as SmartFood and Smart EcoMountains, as well as wide-reaching agroecology initiatives such as ALL-Ready. To learn about the technology underpinning these projects, please see the presentations below.

LifeWatch ERIC would like to thank event organisers University of AlgarveLIPINCD and CSIC. The Iberian Peninsula is a biodiversity hotspot and it is key that synergistic initiatives and projects such as those mentioned during the meeting are maintained and expanded, and IBERGRID 2022 provided the perfect opportunity to acknowledge and reinforce cross-border collaboration.

To see photos from the event, please see our gallery.

Presentations from the IBERLifeWatch workshop are available below:


José Manuel Ávila | Innovation on Agroecology to support a transition to more sustainable and resilient agrifood systems

Kety Cáceres Falcón & Sofía Vaz | Funding European opportunities for ES-PT collaboration

Estação Biológica de Mértola | Presentation

Juan Miguel González-Aranda | IBERLifeWatch: A scientific, technology and innovation Communities of good practices approach

Pablo Guerrero, Jaime Lobo & Emilio de Leon | Improving the environmental monitoring cycle, remote sensing & space technologies

Rohaifa Khaldi | Application of Artificial Intelligence in the study of Ecosystems

Emilio de Leon | Early detection of invasive species using metabarcoding

Joaquín López | LifeBlock and semantic environment status and roadmap

Carlos Javier Navarro | Remote Sensing in ecology and conservation of mountain systems

Nuria Pistón | Ecosystem Services modelling in mountain systems

José Rodriguez Quintero | University of Huelva cross-border projects

Teresa del Rey | Improving connectivity between populations of the endangered Iberian lynx

Antonio José Sáenz Albanés | Tesseract

Antonio José Sáenz Albanés | Technical Presentations Report

Diego de los Santos | Spanish-Portuguese cooperation for the conservation of Iberian biodiversity

Ester Serrão | Biodiversity and Function of underwater habitats




Centro Internacional de Investigacion e Innovacion en Biodiversidad

Oficina Técnica de apoyo a proyectos FEDER LifeWatch ERIC con Junta de Andalucía

Parque Natural Los Alcornocales

Valorizacion de servicios ecosistemicos mediante plataforma AI

Andalusian Minister of Sustainability, Environment and Blue Economy visits LifeWatch ERIC

andalusia sustainability

The Minister for Sustainability, Environment and Blue Economy of the Junta de Andalucía (Regional Government of Andalusia), Ramón Fernández-Pacheco, visited LifeWatch ERIC’s technological headquarters in Seville this week, in recognition of the Infrastructure as “a scientific and technological reference point” in the field of biodiversity, nature and climate change. He was accompanied by the deputy minister, Sergio Arjona, and the general secretary, María del Mar Plaza.

The purpose of the visit was for the representatives of the Junta de Andalucía to see first-hand the numerous projects LifeWatch ERIC is working on in the region to protect and restore biodiversity and combat the negative effects of climate change. One such example of this is the Indalo project, in collaboration with the Junta de Andalucía, aimed at creating a network of climate change monitoring observatories in the region, which sees the participation of Andalusian public universities, as well as government institutes IFAPA (Andalusian Institute of Agricultural and Fisheries Research and Training) and INTA (National Institute of Aerospace Technology). It encompasses the study of biodiversity in Andalusian ecosystems, analysing emerging patterns from the impact of climate change, and possible consequences.

“The Junta de Andalucía is proud that an outstanding European scientific entity such as LifeWatch ERIC has its headquarters and management bodies, together with more than 20 scientists, many of them Andalusian, in Seville, which demonstrates the enormous potential of our region to face environmental challenges”, commented the Minister Fernández-Pacheco.

LifeWatch ERIC CTO, Juan Miguel González-Aranda, who gave the tour, made the following statement: “We are honoured to have welcomed the Minister to our office. His visit is symbolic of the long-lasting synergy that LifeWatch ERIC has with the Junta de Andalucía, as successful collaborative projects continue to produce positive benefits for the region and further afield. We are extremely grateful for the Junta’s ongoing support.”

Semantic Synergies at the OntoPortal Alliance Workshop

OntoPortal Alliance Workshop

At the end of September, members of the team from LifeWatch ERIC and LifeWatch Italy were in Montpellier, France, for the OntoPortal Alliance Workshop. The OntoPortal Alliance is a consortium of research and infrastructure teams (and one SME) dedicated to promoting semantic and ontology services—in science and more—based on the open, collaboratively developed OntoPortal open-source software. Teams in the Alliance develop and maintain several openly accessible semantic resource repositories. This includes BioPortal, the primary and historical source of OntoPortal code, but also AgroPortal, EcoPortal, MedPortal and MatPortal.

The 2022 OntoPortal Alliance Workshop’s main goal was to consolidate the OntoPortal Alliance organisation and shared agenda. External parties interested in re-using and/or participating to the development of OntoPortal, or more generally interested in the management of ontologies and other types of semantic resources (terminologies, vocabularies, thesauri, etc.) were also welcome at the event, which included an open tutorial on “Setting up your appliance” (for condensed technical information on how to quickly deploy your own ontology repository). 

During the session, the representatives from the anthologies repositories discussed how they plan to use the ontology repositories provided by the alliance. Nicola Fiore, Xeni Kechagioglou (LifeWatch ERIC) and laria Rosati (LifeWatch Italy) presented EcoPortal, the repository of semantic resources developed by LifeWatch ERIC and co-managed with the Italian national node, to brainstorm its next evolution together with the alliance partners. Such synergies are fundamental to ensuring the coordination of the development of semantic resources for scientific research.

In Seville for the EOSC Future Consortium Meeting

eosc future consortium meeting

From 28­–30 September, LifeWatch ERIC hosted a Consortium Meeting of the Horizon2020 project, EOSC Future, at la Casa de la Ciencia, in Seville. At 18 months into the project, the meeting served to review its execution thus far, as well as the next steps to be followed. All the consortium partners were represented, with 71 people attending in person and about 30 online. On the first day, the morning was dedicated to “WP6: Integration of Community Services and Products into EOSC”, which is led by LifeWatch ERIC, and involves the demonstration of EOSC value through Cross-domain Research Science Projects (10 Science Projects are involved in this WP) which will mobilise the research communities for widespread the use of EOSC resources.

Read more about the project’s ambitions:

EOSC Future will build on the existing baseline for the European Open Science Cloud to deliver a platform with a durable set of user-friendly components that are designed for the long haul. It will adopt a system-of-systems approach to the EOSC platform, linking together other research portals, resources and services to respond to the data needs of a wide range of researchers.

One way to think about EOSC is as a fully operational web of data and related services founded on FAIR protocols, principles and standards for accessing interoperable datasets. In practice, EOSC Future will work with key stakeholders to ensure a smooth user experience, developing:

  • EOSC core, the set of enabling services needed to operate the EOSC
  • EOSC exchange registering resources and services from research infrastructures, other EOSC projects and science clusters to the EOSC and integrating them with the EOSC core functionalities
  • the EOSC interoperability framework will provide guidelines for providers that want to integrate services or data into EOSC

EOSC Future will engage with users throughout the different development stages to make sure the EOSC matches researchers’ needs and is intuitive. It will also provide support and training to make sure users can make the most of the EOSC platform.

To learn more about the projects in which LifeWatch ERIC is involved, please visit our Related Projects page.

e-Science Research for the Provision of Green Medicines

Green Medicines

The UNGA77 Science Summit (SSUNGA77) is taking place from 13–30 September 2022 in New York and online, organised and moderated by ISC Intelligence in Science (advisory firm specialised in science, technology and policy). Following the successful Biodiversity Plenary which was hosted by LifeWatch ERIC and GBIF last Friday 16 September, LifeWatch ERIC CTO, Juan Miguel González-Aranda, was invited to participate yesterday, Tuesday 27 September, in an important SSUNGA77 session dedicated to Green Medicines: Plant Molecular Farming and a New Collaboration Model for Addressing Global Health Challenges.

Dr González-Aranda gave his presentation during the Moderated Panel Discussion: Policy Framework for Stimulating Cooperative Capacity Building for Better Access to Medicines and Vaccines, entitled LifeWatch ERIC: e-Science Research Collaborationon e-Biodiversity & Ecosystem Services to support the provision of Green Medicines.

Convened by “Medicines for Future (M4F)” initiative, the University of Natural Resources and Life Sciences, Vienna (BOKU), Austria, and Cape Bio Pharms, South Africa, in cooperation with the International Society for Plant Molecular Farming, the session aimed to contribute to increasing the accessibility of essential medicines to people in low- and middle-income countries. Similarly to the Biodiversity Plenary, the results of the session will also be used to prepare joint input for the United Nations Summit of the Future, which will take place in 2024, aiming at further developing the collaboration model and to increase awareness for Plant Molecular Farming as an affordable, innovative and versatile manufacturing platform for biopharmaceuticals and beyond at high-level decision makers globally. An extremely important initiative that will be enriched by the participation of LifeWatch ERIC.

Appearing in the photo from left to right: Kurt Zatloukal, Medical University of Graz, Austria, Declan Kirrane, ISC Intelligence, Josef Glössl, University of Natural Resources and Life Sciences, Vienna, Austria

Stepping Closer to Biodiversity 2030 with Biodiversa+

Data Interoperability

On 1 September, alongside 37 other participants, LifeWatch ERIC took part in the Data Interoperability and Harmonisation workshop organised by Biodiversa+, with a presentation from LifeWatch ERIC Web Portal Officer, Lucia Vaira. During her presentation, she gave an overview of the EOSC Interoperability Framework in technical, semantic, organisational and legal terms, explaining the (Meta)data structure and workflows within LifeWatch ERIC, along with the status and main challenges of interoperability within the Infrastructure.

Biodiversa+ is the European Biodiversity Partnership supporting excellent research on biodiversity with an impact for society and policy. It was jointly developed by BiodivERsA and the European Commission as part of the EU Biodiversity Strategy 2030, and will contribute to the ambition that “by 2030, nature in Europe is back on a path of recovery, and that by 2050 people are living in harmony with Nature”. The Commission recognises that it is vital to make biodiversity data more accessible in order to make faster progress in this research area and achieve the objectives of the EU Biodiversity Strategy.

Lucia Vaira touched on many important topics in her presentation, demonstrating not only key openly-accessible LifeWatch ERIC tools such as the Metadata Catalogue and EcoPortal, but explaining the importance of interoperability to the Infrastructure: In light of the FAIR principles, interoperability essentially means that “research data need to be integrated with other data; and need to interoperate with applications or workflows for analysis, storage, and processing”, principles which are always held in consideration during the development of the Infrastructure’s tools. After all, interoperability is essential to enable the seamless combination of all LifeWatch ERIC’s assets, providing added value for the final users. You can access the full presentation here.

Other speakers at the event included Alberto Basset – Italian Ministry of Universities and Research, Hilde Eggermont – BelSPO, Dani Villero Pi and Nestor Fernandez – EuropaBON, Tim Hirsc – GBIF, and Sujeevan Ratnasingham and Rutger Vos – BIOSCAN/iBOL, with whom a fruitful discussion was held on how Biodiversa+ can help achieve effective data interoperability. LifeWatch ERIC is honoured to participate in opportunities to nurture and maintain multilateral dialogue within the European Research Area to support the EU Biodiversity 2030 Strategy, in line with its mandate to enhance understanding, linkages and synergies between biodiversity loss and other societal challenges. Increased interoperability with other biodiversity databases through the support of Biodiversa+ facilitates the Infrastructure in its mission to mobilise and integrate data and algorithms for biodiversity and ecosystem research.

2nd General Assembly of the ResInfra EU-LAC Project

ResInfra EU-LAC General Assembly

This week, LifeWatch ERIC personnel Juan Miguel González-Aranda (CTO), Maria Luz Vázquez (Direction Secretary & QARM – FiTSM Technical Assistant for ICT-Core), Rocío Moreno (Project Executive Coordinator) and Cristina Huertas Olivares (International Initiatives & Projects Manager) are in Montevideo, Uruguay, for the second General Assembly of ResInfra EU-LAC.

The ResInfra EU-LAC project pursues the construction of bi-regional collaboration between European Union and the LAC countries (Latin America and the Caribbean), and the meeting has gathered representatives from Uruguay and the European Commission as well as partners of the EU-LAC ResInfra Consortium to discuss items such as the project Sustainability Plan, the benefits of Research Infrastructure cooperation, and the next Horizon Europe INFRA work programme. On 20 July, LifeWatch ERIC CTO Juan Miguel González-Aranda gave a presentation on the “LifEuLAC pilot on Biodiversity and Climate Change.”

To learn more about the projects LifeWatch ERIC is involved in, please visit our Related Projects page.

Research Infrastructures Accelerating Global Effort to Achieve Environmental Sustainability

ESOF 2022

Today, 15 July 2022, the ERIC Forum organised an online session as part of the EuroScience Open Forum (ESOF2022), taking place in Leiden from 13 – 16 July 2022.

The session, entitled “Research Infrastructures’ contribution to environmental sustainability puts Research Infrastructures and the added value they bring to the European Research Area in the spotlight, with their major role in creating new opportunities to advance scientific research, enabling access to large-scale facilities and e-Science infrastructures.

LifeWatch ERIC Chief Technology Officer, Juan Miguel González-Aranda, is joining the session with a presentation on the “The key role of Research Infrastructures to advance Environmental Sustainability through Digital Transformation”. Illustrating the role that LifeWatch ERIC tools like Tesseract and LifeBlock can play in the organisation and management of knowledge, the presentation demonstrates how, through the many projects in which the infrastructure is involved, they can support biodiversity conservation, ecosystem services monitoring and assessment, and ultimately human well-being, contributing to the achievement of the United Nations’ Sustainability Development Goals, as well as the targets of the European Biodiversity Strategy and Green Deal.

Today’s panel also witnesses the participation of ESBB President, Dominik Lermen, Deputy Director of CERIC-ERIC, Ornela de Giacomo, Director General of BBMRI-ERIC, Jens Habermann, and was moderated by the ERIC Forum Chair, and Director of JIVE-ERIC, Francisco Colomer.