New ESFRI Roadmap Launched

ESFRI Roadmap

 Αfter a two-year-long process of hard and meticulous work by a great number of scientists and ESFRI delegates, a new ESFRI Roadmap was published on 7 December 2021. ESFRI presented the 2021 ESFRI Roadmap on Large Scale Research Infrastructures during a half-day online conference, which you can watch here. For more information, please visit the Launch Event webpage. The ESFRI Roadmap contains probably the best European science facilities based on a thorough evaluation and selection procedure. It combines ESFRI Projects, which are new research infrastructures in progress towards implementation, and ESFRI Landmarks, successfully implemented Research Infrastructures. The document also describes the broader Landscape of research in Europe which is an important component to ESFRI methodology. 

The ESFRI Roadmap 2021 includes 11 new Research Infrastructure Projects and reports on the development of research infrastructures under the existing Roadmap. All previous ESFRI Roadmap updates proved to be very influential and provided useful strategic guidance for European Countries’ investments, which goes beyond the research infrastructure domain. The 2021 update also considers the merits of the Open science concept and highlights the quest to address global challenges, as reflected in the UN Sustainable Development Goals. One of the key aspects of ESFRI rests in ensuring that excellent scientists have access to Europe’s best Research Infrastructures, irrespective of borders. This requires truly pan-European collaboration and a global outlook. In this process, ESFRI has acquired immense and valuable experience which it is pleased to share across countries and research infrastructure projects.

Follow and Share Roadmap 2021 news on Twitter: #ESFRIRoadmap2021

Information taken from the ESFRI website.

LifeWatch ERIC in round table: “A Preview of the Role of Science at the EU-Africa Summit 2022”

EU-Africa Summit 2022

On 8–9 December 2021, AERAP Science (the Africa-Europe Science and Innovation Platform) hosted the round-table session “A preview on the Role of Science at the EU-Africa Summit 2022”, to consider the contribution of science to the priorities for the EU-Africa Summit on 17–18 February 2022 in Brussels. In his contribution, Dr Juan Miguel González-Aranda, LifeWatch ERIC CTO and ERIC Forum Executive Board Member, addressed the necessity of establishing an EU-AFRICA e-Biodiversity network, in order to accomplish the Sustainable Development Goals regarding the sustainable provision of ecosystem services.

For more information on this event, please see the AERAP article.

Full participant list:

Orla Feely – Vice President for Research, Innovation & Impact (VPRII), University College Dublin, Ireland

Erik Hansalek – Federal Ministry of Education and Research (BMBF), Germany

Racey Muchilwa – Head of Novartis, Sub Saharan Africa (SSA), Novartis, Kenya

Daan du Toit – Deputy Director-General: ICR, Department of Science and Innovation, South Africa

Maria Cristina Russo – Director for Global Approach and International Cooperation in R&I at European Commission, European Commission, Belgium

Mahama Ouedraogo – Director, Science and Technology Department, African Union Commission, Ethiopia

Shamila Nair-Bedouelle – Assistant Director-General for Natural Sciences, UNESCO, France

Jean-Pierre Bourguignon – Institut des hautes études scientifiques (IHES), France

Juan Miguel González-Aranda – LifeWatch ERIC Chief Technology Officer & ERIC FORUM Executive Board Member

Michael Makanga – Director, European Developing Countries Clinical Trials Partnership (EDCTP), Netherlands

Raham Rachdi – USPA, Paris

Rahel Belete – Kilimanjaro Innovation Hub, Ethiopia

Djime Adoum – Director General, Sahel Coalition, Chad

Bernd Halling – Head of Corporate Strategy, Bayer AG

Intisar Soghayroun – Minister, Ministry of Higher education and Scientific Research, Sudan

Space4Climate Action: LifeWatch ERIC at the World Space Forum

Space4Climate Action

Yesterday, during the second day of the 2021 World Space Forum “Space4Climate Action” organised by UNOOSA (the United Nations Office for Outer Space Affairs), LifeWatch ERIC CTO, Dr Juan Miguel González-Aranda, presented “Towards the establishment of a global e-Biodiversity network for Sustainable Development Goal accomplishment and Ecosystem Services provision”. Dr González-Aranda highlighted that humanity is bringing our life support system, the biosphere, to the point of collapse, proposing that to solve this situation we must deepen our current level of knowledge, move beyond the present fragmentation of science, and foster greater complementarity and synergy between disciplines. One of the ways to do this being the development of new trans-disciplinary paradigms and the building of synthetic knowledge, with the aim of boosting innovation and a great involvement of young scientists and civil society.

LifeWatch ERIC is Europe’s first line of response to the biodiversity emergency, applying state-of-the-art ICT (Remote Sensing, Big Data, HPC-Cloud-Edge Computing, Blockchain, AI-Machine Learning, IoT-Sensor Networks, etc.) and services to scientific Communities-of-Practice and research centres all over the world through its distributed e-Infrastructure. It engages with and interconnects Researchers, Technologists, Decision-makers, Environmental Managers, Companies, Entrepreneurs, and Citizen Scientists, helping these stakeholders to develop their activities into Virtual Research Environments (VREs). This demonstrates the added value which ICT brings to battling “The Big Five” significant causes of biodiversity loss (changing use of sea and land, direct exploitation of organisms, climate change, pollution and invasive non-native species), contributing significantly to the introduction of the appropriate measures to combat them. LifeWatch ERIC is particularly involved, for instance, in Aichi Target 9, regarding Non-indigenous and Invasive species.

These activities are being carried out in synergy with the UN SDGs (in particular, 15: Life on Land and 14: Life on Water), the EU Biodiversity Strategy for 2030, the European Green Deal, and many more. This is in addition to the essential role of the forthcoming Global Europe instrument (as often cited in ongoing EU-CELAC and EU-African Union cooperation) in relation to indigenous knowledge. The recognition of the importance of indigenous knowledge in reversing biodiversity loss is further reflected in the recent creation of IKRI (the Indigenous Knowledge Research Infrastructure) where key outcomes are anticipated in cooperation with prominent stakeholders, including UNOOSA, ITU (The UN International Telecommunications Union) and LifeWatch ERIC.

You can see the full programme here.

LWGreece Research Infrastructure Data Services

Research Infrastructure Data Services

The Hellenic Centre for Marine Research (HCMR) is working on the enhancement of the LifeWatchGreece Research Infrastructure (LWGreece RI) Data Services. The purpose of these activities is to provide end-users with a user-friendly service, enabling them to search and access (meta)data from two sources, Micro-CT vLab and IPT MedOBIS.

The activities are divided into three major categories:

(a) design and implementation of facilities for harvesting data

(b) data modelling and semantic data transformation activities, and

(c) updates and enhancements of the Data Services of the LWGreece RI.

More details of these activities are given below:

A set of supporting services and tools have been designed and implemented, able to harvest resources from two databases: (a) the IPT MedOBIS database and (b) the Micro-CT vLab database. A harvesting mechanism has been implemented that exports information from the above-mentioned sources, which are subsequently transformed and added to LWGreece repositories (see point below). 

After harvesting data from the sources described above, they needed to be homogenised before depositing them in the repositories of the LWGreece infrastructure. To this end, a set of mappings was implemented, using X3ML Specification Language,[1] that describes the transition of the harvested resources from their original schemata, to a common target top-level ontology MarineTLO.[2] The result was a set of ontological-based descriptions regarding MarineTLO that were inserted into the LWGreece semantic repositories.

Several endpoints of the Data Services were updated, so that they can properly retrieve information from LWGreece semantic repositories. In addition, we have enhanced the services based on the findings and the updated modelling that emerged from the two new sources that were used (i.e., IPT MedOBIS, micro-CT vLab). 

It is worth mentioning that the Data Services (along with all the other available vLabs) is now available through the Metadata Catalogue of LifeWatch ERIC. Allowing this central catalogue to be machine-interoperable is necessary for the population of the catalogue, and implements the FAIR principles and EOSC-interoperability, promoted through ENVRI-FAIR WP9 and WP11.

[1] Marketakis, Y., Minadakis, N., Kondylakis, H., Konsolaki, K., Samaritakis, G., Theodoridou, M., Flouris, G. and Doerr, M., 2017. X3ML mapping framework for information integration in cultural heritage and beyond. International Journal on Digital Libraries, 18(4), pp. 301-319.

[2] Tzitzikas, Y., Allocca, C., Bekiari, C., Marketakis, Y., Fafalios, P., Doerr, M., Minadakis, N., Patkos, T. and Candela, L., 2016. Unifying heterogeneous and distributed information about marine species through the top level ontology MarineTLO. Program, 50(1), pp. 16-40.

Explainers: the Micro-CT vLab

Micro-CT vLab

The Micro-CT vLab is a virtual laboratory which is hosted in the Hellenic Centre for Marine Research (HCMR) and was initially established during the ESFRI LifeWatchGreece Research Infrastructure. This virtual lab offers users access to virtual galleries of various samples which can be displayed and downloaded through a web application. This tool has been updated over the Elixir-GR, BIOIMAGING-GR and Synthesys+ projects with the addition of several new features. Firstly, the Micro-CT vLab has now been upgraded to Drupal version 9. A series of micro-CT datasets from medical to biological studies can be uploaded in order to be stored and disseminated.

Furthermore, the Micro-CT vLab has now a REST API for creating new content. Through the API, the user has the ability to access micro-CT API endpoints, which can retrieve information about various micro-CT scans, species and metadata information related with the micro-CT datasets. A metadata catalogue has been also created in order to dynamically display the complete metadata available for each dataset which are published in the micro-CT. Finally, following registration, the user now has the ability to upload the original micro-CT datasets and the related metadata through a user-friendly form.

You can watch a short demonstration video of the Micro-CT vLab below.

New BiCIKL project to build a freeway between pieces of biodiversity knowledge

BiCIKL

In a recently started Horizon 2020-funded project, 15 European institutions, from 10 countries, representing both the continent’s and global key players in biodiversity research and natural history, deploy and improve their own and partnering infrastructures to bridge gaps between each other’s biodiversity data types and classes. LifeWatch ERIC is one of these institutions. By linking their technologies, these project partners are set to provide flawless access to data across all stages of the research cycle.

Three years in, BiCIKL (abbreviation for Biodiversity Community Integrated Knowledge Library) will have created the first-of-its-kind Biodiversity Knowledge Hub, where a researcher will be able to retrieve a full set of linked and open biodiversity data, thereby accessing the complete story behind an organism of interest: its name, genetics, occurrences, natural history, as well as authors and publications mentioning any of those.

Ultimately, the project’s products will solidify Open Science and FAIR (Findable, Accessible, Interoperable and Reusable) data practices by empowering and streamlining biodiversity research.

Together, the project partners will redesign the way biodiversity data is found, linked, integrated and re-used across the research cycle. By the end of the project, BiCIKL will provide the community with a more transparent, trustworthy and efficient highly automated research ecosystem, allowing for scientists to access, explore and put into further use a wide range of data with only a few clicks.

“In recent years, we’ve made huge progress on how biodiversity data is located, accessed, shared, extracted and preserved, thanks to a vast array of digital platforms, tools and projects looking after the different types of data, such as natural history specimens, species descriptions, images, occurrence records and genomics data, to name a few. However, we’re still missing an interconnected and user-friendly environment to pull all those pieces of knowledge together. Within BiCIKL, we all agree that it’s only after we puzzle out how to best bridge our existing infrastructures and the information they are continuously sourcing that future researchers will be able to realise their full potential,” explains BiCIKL’s project coordinator Prof. Lyubomir Penev, CEO and founder of Pensoft, a scholarly publisher and technology provider company. 

Continuously fed with data sourced by the partnering institutions and their infrastructures, BiCIKL’s key final output: the Biodiversity Knowledge Hub, is set to persist with time long after the project has concluded. On the contrary, by accelerating biodiversity research that builds on – rather than duplicates – existing knowledge, it will in fact be providing access to exponentially growing contextualised biodiversity data.

Follow BiCIKL Project on Twitter and Facebook. Join the conversation on Twitter at #BiCIKL_H2020.

LifeWatch ERIC in IKRI Launch

Click here to watch a short explanatory video on IKRI.

The UNGA76 Science Summit is in full swing, and LifeWatch ERIC has already played an active part in several sessions, looking forward to the LifeWatch ERIC-convened session on SDGs 14 and 15 on 1 October 2021. On 23 September, LifeWatch ERIC CTO, Dr Juan Miguel González-Aranda, alongside Prof Vladislav Popov and Ms Karina Angelieva from LifeWatch Bulgaria, took part in an important session on the launch of the Indigenous Knowledge Research Infrastructure (IKRI), which approximately 140 people attended.

The UNFSS (UN Food Systems Summit) recommended five ongoing Action Areas where the UN will place a particular focus and take increased responsibility to link the local to the global and support implementation at country level to maximise impact on the 2030 Agenda.* These Action Areas will help to organise, guide, and direct the wealth of initiatives emerging from the Summit process to achieve the SDGs. Action area 5: “Support the Means of Implementation” covers the following: Finance; Governance; Science and Knowledge (Indigenous Food Systems); Innovation, Technology, & Data, Capacity; and Human Rights, and beyond).

The “Global Research Initiative and Knowledge Repository to integrate Indigenous Knowledge into Food Systems” was developed as part of the UN Food Systems Summit process, with the collective efforts of CANEUS, together with The Fund for the Development of Indigenous Peoples of Latin America and the Caribbean (FILAC), United Nations Office for Outer Space Affairs (UNOOSA), The International Center for Agricultural Research in the Dry Areas (ICARDA), The Africa-Europe Science and Innovation Platform (AERAP) and LifeWatch ERIC. It will contribute to action area 5: “Support Means of Implementation”, and was launched at the UN FSS Summit.

This Global research initiative aims to develop digital infrastructure to support more comprehensive R&D collaboration between the UN and the EU, AU, and other regions, creating partnerships and sustained access to data and information sources globally and lessening the regulatory burden associated with access to and use of public data. The initiative will function as a digital infrastructure known as IKRI, based on the EU Strategy Forum for Research infrastructures ESFRI. It will have a component of “Technology-based Repository” that utilises frontier Technologies (Earth observation and geospatial intelligence with 4th Industrial Revolution Technologies) for the development of a portal that captures, processes, analyses and presents Indigenous knowledge through multiple sources.

The IKRI is hoped to increase the level and range of partners who can bring Indigenous knowledge to collaborative research supported by the EU Horizon Europe Programme and other research programmes implemented at state level and committed to supporting the SDGs. It would further leverage the EU Neighbourhood, Development and International Cooperation Programme, known as the Global Europe Programme, to support Indigenous knowledge, ensuring that developing nations are considered within the context of enabling global policies and related regulations to ensure that the global regulatory environment does not become a barrier to knowledge exchange, but rather supports access to and use of patent data, knowledge and know-how.

*(1) Nourish All People, (2) Boost Nature-based Solutions, (3) Advance Equitable Livelihoods, Decent Work & Empowered Communities, (4) Build Resilience to Vulnerabilities, Shocks and Stresses, and (5) Support Means of Implementation.

LifeWatch ERIC in BiCIKL Kick-Off Meeting

BiCiKL

The kick-off meeting for the Biodiversity Community Integrated Knowledge Library (BiCIKL) took place last week on 27-28 May! LifeWatch ERIC is proud to be one of the fourteen official partners of this Horizon 2020 project,* contributing to the establishment of open science practices in the biodiversity domain as it follows its own mission to become a worldwide provider of content and services for this research community.

But what is BiCIKL?

BiCIKL is an EU-funded project coordinated by Pensoft that aims to unite key European and international research infrastructures across ten countries in their quest to facilitate open science and fair data practices in the biodiversity scientific community. Its four key products have been identified as: a community equipped with tools for searching and accessing FAIR (findable, accessible, interoperable, and reusable) interlinked data; an interlinked corpora of knowledge for biodiversity and related research domains; automated tools and workflows for data liberation and FAIRisation from literature; and semantic-based journal production workflows for publication and reuse of FAIR biodiversity data.

What exactly does it do?

BiCIKL plans to build a Biodiversity Knowledge Hub, providing access to data, associated tools and services at each stage and along the entire research cycle. Speaking technically, it will focus on harvesting, liberating, linking and reusing subarticle level data literature (specimens, material citations, samples, sequences, taxonomic names, taxonomic treatments, figures, tables, etc.), whether PDF- or XML-based. It will provide seamless linking and usage tracking of data along the line: specimens → sequences → species → analytics → publications → biodiversity knowledge graph → re-use.

What role does LifeWatch ERIC play?

LifeWatch ERIC, which already carries out specialised work in the areas of semantics and usage tracking, will be key in helping BiCIKL develop the methods, tools and workflows required for the realisation of BiCIKL goals. Its two main tasks will be to analyse the technical requirement of users and implement the Biodiversity Knowledge Hub (BiKH). It will participate in testing and streamlining interoperability and the alignment of findability, reuse and accessibility. Furthermore, LifeWatch ERIC will contribute to defining and implementing the necessary operational framework, as well as identifying BiKH components and translating the functional diagramme and operational framework into an educational cloud.


BiCIKL’s website is currently under construction, but you can follow its activities on Twitter.


*grant agreement No. 101007492, duration May 2021-2024

Space and the Sustainable Development Goals 2030

UNGA 75

LifeWatch ERIC was represented on Friday 10 October, 2020, at another international online workshop by Chief Technology Officer Dr Juan Miguel González-Aranda. Entitled Space and SDG 2030, and organised by Science Digital @ UNGA 75, the forum discussed how to frame the contribution of space technologies to the attainment of the United Nations Sustainable Development Goals (SDGs), and featured contributions from Ireland, Germany, Spain, the Netherlands, Canada, Nicaragua, and the UN.
 
Dr González-Aranda’s presentation at UNGA 75 started from the premise that human well-being depends on healthy ecosystems and that LifeWatch ERIC’s work, in assessing and monitoring ecosystem functions to understand the underlying ecological processes of biodiversity, is critical to achieving the UN’s Sustainable Development Goals.
 
Using Tesseract VRE, the product-framework being deployed to build large-scale virtual research environments, and LifeBlock, the blockchain technology to guarantee the provenance and persistence of evidence, LifeWatch ERIC is using remote sensing information from space to providing science-based management frameworks, tools and mechanisms.  
 
Working with other Research Institutes, and offering expertise on cross-border initiatives, as in EU-LAC and EU-AFRICA, LifeWatch ERIC is applying Artificial Intelligence and Big Data services to enable faster and more accurate detection and identification of species. This helps the United Nations Office for Outer Space Affairs -UNOOSA-, for example, to link space and wildlife communities and understand what is going on. By assisting international agencies and building citizen awareness, these operations contribute critically to preserving the planet.

Towards a Comprehensive & Integrated Strategy of the European Marine Research Infrastructures for Ocean Observations

Strategy European Marine Research Infrastructures

LifeWatch ERIC Service Centre Director Alberto Basset and CTO Juan Miguel González-Aranda have contributed to a recently-published paper that addresses today’s environmental challenges, entitled “Towards a Comprehensive & Integrated Strategy of the European Marine Research Infrastructures for Ocean Observations”, published in Frontiers in Marine Science.

Addressing environmental challenges is crucial for humanity and for life on Earth, and will depend on accurate information about fundamental processes in the geosphere, hydrosphere, biosphere and atmosphere, and their interactions. Marine Research Infrastructures (RIs) are key tools for understanding these complexities and interrelationships through multi-, inter-disciplinary approaches, because they constitute a dynamic long-term infrastructure framework, supported by European and national funds, to facilitate research, and provide highly accurate data and services.

Collaboration is essential to provide solutions to complex issues that cannot be solved by one partner alone. Europe has the resources and capacity to make comprehensive ocean observations for the benefit of society, and collaboration between RIs is emphasizing the development of multi-sensor technologies and the adoption of multi-parameter and interoperable methodologies for integrated and sustained marine observations. Click here to download the article.