LifeWatch Greece integrated into GOOS Biology and Ecosystems GeoNode

GeoNode BioEco Portal

The LifeWatch Greece national node, led by HCMR, hosts a large and continuously updated database with biodiversity data collected from monitoring projects throughout the Mediterranean (MedOBIS). As of September, it has been integrated as a layer of GeoNode BioEco Portal as a monitoring project for Greek Bioversity.

The GOOS BioEco Portal is a publicly available tool to monitor the status of the marine biological observing system. The GEONODE is the back-end interface where registered users can upload, edit and manage their monitoring program details including which EOVs (Essential Ocean Variables) and EBVs (Essential Biodiversity Variables) are monitored; spatial and temporal information; status of the program; data availability and licences; standardisation and protocols; as well as links to applications, tools and outputs based on the collected observations. This GeoNode is hosted and maintained by the secretariat of the Ocean Biodiversity Information System (OBIS) based at the IOC Project Office for IODE in Ostend, Belgium as a service to support the Global Ocean Observing System Biology and Ecosystem Panel.

You can find the original article on the LifeWatch Greece website.

Second open access data paper published in the Biodiversity Data Journal

procambarus clarkii

The “LifeWatch ERIC Collection of Data and Services Papers” published in the Biodiversity Data Journal is dedicated to the resources and assets developed, upgraded and used during the implementation of the Internal Joint Initiative (IJI), our flagship project focused non-indigenous and invasive species (NIS). Following the debut paper “An individual-based dataset of carbon and nitrogen isotopic data of Callinectes sapidus in invaded Mediterranean waters” (Di Muri et al.) in January, a second open-access data paper in this series was published on 20 October 2022, entitled “Individual and population-scale carbon and nitrogen isotopic values of Procambarus clarkii in invaded freshwater ecosystems” (Di Muri et al.).

Freshwater ecosystems are amongst the most threatened habitats on Earth; nevertheless, they support about 9.5% of known global biodiversity while covering less than 1% of the globe’s surface. One such threat are NIS such as the Louisiana crayfish, Procambarus clarkii. Crayfish species are widely-distributed freshwater invaders and, while alien species introductions occur mostly accidentally, alien crayfish are often released deliberately into new areas for commercial purposes. Native to the south United States and north Mexico, P. clarkii has been introduced in Europe, Asia and Africa, having negative impacts in the majority of invaded habitats where it became dominant, meaning it had become essential to evaluate the ecological consequences and quantify its impact.

The paper presents two geo-referenced datasets of isotopic signatures of the Louisiana crayfish and its animal and vegetable prey in invaded inland and brackish waters. To the best of the authors’ knowledge, this effort represents the first attempt to collate in standardised datasets the sparse isotopic information of P. clarkii available in literature. The datasets provide a spatially explicit resolution of its trophic ecology and can be used to address a variety of ecological questions concerning its ecological impact on recipient aquatic food webs.

The research was carried out within the context of the IJI, more specifically the ‘Crustaceans Workflow’, one of the validation cases used to develop an interdisciplinary Virtual Research Environment that utilises disruptive technologies to deal with the impacts of NIS on native species, genetic diversity, habitats, ecosystem functioning and services, and to inform current practices in environmental management and policy implementation. Stay tuned for the next paper!


ACCESS THE PAPER HERE

LifeWatch ERIC in Meeting on Disruptive Technologies

Disruptive technologies

Tomorrow morning, on Wednesday 19 October, LifeWatch ERIC will have the opportunity to meet and establish relationships with other creators and promoters of disruptive technologies, at the online B2B meeting organised by PTE Disruptive of the Association of Science and Technology Parks of Spain (APTE) focused on opportunities in the biotech sector (in Spanish).

LifeWatch ERIC CTO, Juan Miguel González-Aranda, will present in a slot from 10:40 – 11:00 CEST. In his presentation, he will talk about the range of disruptive technologies used by LifeWatch ERIC – the virtual infrastructure available to anyone who wishes to support research on biodiversity and the valorisation of ecosystem services with reliable data. 

Other participants include: Felipe Romera, president of Malaga TechPark and APTE, who will present the Spanish Platform of Disruptive Technologies; María Angeles Ferré, responsible for scientific-technical thematic programmes at the State Research Agency, who will talk about the aid programmes; Gabriel Anzaldi Varas, director of technological scientific development at EURECAT, who will speak about digital-bio technological convergence and its applications; and Raquel Álvarez Fernández, head of statistics and intelligence at the Spanish Association of Biocompanies (AseBio), who will discuss business opportunities in the biotech sector. 

The meeting will also see presentations from three company representatives with practical examples on the use of disruptive technologies: Exheus CEO, Teresa Tarragó; Zymvol Biomodeling SL CTO Maria Fátima Lucas; and Honey.Ai COO Iratxe Perales. APTE is funded by Ministry of Science and Innovation of Spain through the AIE.

Interested persons are invited to register for the event using the form (in Spanish).

Bilateral meetings will be held after the presentations and will not be streamed.

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Fortifying Spanish-Portuguese Cooperation on Technology for Research at IBERGRID 2022

IBERGRID 2022

IBERGRID 2022, the 11th Iberian Grid Conference, took place 10–13 October at the University of Algarve in Faro, Portugal. IBERGRID stands for the Iberian Grid Structure, federating computing and data resources across the Iberian area to support research and innovation. The theme of the conference was “Delivering Innovative Computing and Data Services for Research”, and LifeWatch ERIC had a strong presence at the event, with a presentation “EOSC Activities in the Environmental Sciences”  from ICT-Core e-Infrastructure Operations Coordinator Antonio José Sáenz on behalf of CEO Christos Arvanitidis and CTO Juan Miguel González-Aranda, as part of the EOSC tripartite event which took place on day 1, and a two-part workshop on “IBERLifeWatch” – focusing on a good practices approach for scientific, technology and innovation communities and on funding opportunities for Spanish-Portuguese cooperation on day 2 and day 4.

During the IBERLifeWatch workshop, LifeWatch ERIC was able to highlight its collaboration several prestigious research entities, with engaging presentations from representatives from FCT, CSIC, MIRRI ERIC, the University of Huelva, the University of Granada, the FCCN Unit, LIP, GBIF, the Royal Botanical Garden of Madrid, the Spanish government, the Junta de Andalucía, the Interreg Spain-Portugal programme, the LIFE programme, Estacão Biológica de Mértola, University of Porto, Leuphana Universität Lüneburg, ADRAL, the University of Aveiro, the University of Minho and many more, as well as coordinators of the Spanish and Portuguese nodes of LifeWatch ERIC itself. State-of-the-art LifeWatch ERIC tools were presented, such as LifeBlock and Tesseract, alongside important ERDF projects in the region involving the participation of the infrastructure, such as SmartFood and Smart EcoMountains, as well as wide-reaching agroecology initiatives such as ALL-Ready. To learn about the technology underpinning these projects, please see the presentations below.

LifeWatch ERIC would like to thank event organisers University of Algarve, LIP, INCD and CSIC. The Iberian Peninsula is a biodiversity hotspot and it is key that synergistic initiatives and projects such as those mentioned during the meeting are maintained and expanded, and IBERGRID 2022 provided the perfect opportunity to acknowledge and reinforce cross-border collaboration.

To see photos from the event, please see our gallery.

Presentations from the IBERLifeWatch workshop are available below:


José Manuel Ávila | Innovation on Agroecology to support a transition to more sustainable and resilient agrifood systems

Kety Cáceres Falcón & Sofía Vaz | Funding European opportunities for ES-PT collaboration

Estação Biológica de Mértola | Presentation

Juan Miguel González-Aranda | IBERLifeWatch: A scientific, technology and innovation Communities of good practices approach

Pablo Guerrero, Jaime Lobo & Emilio de Leon | Improving the environmental monitoring cycle, remote sensing & space technologies

Rohaifa Khaldi | Application of Artificial Intelligence in the study of Ecosystems

Emilio de Leon | Early detection of invasive species using metabarcoding

Joaquín López | LifeBlock and semantic environment status and roadmap

Carlos Javier Navarro | Remote Sensing in ecology and conservation of mountain systems

Nuria Pistón | Ecosystem Services modelling in mountain systems

José Rodriguez Quintero | University of Huelva cross-border projects

Teresa del Rey | Improving connectivity between populations of the endangered Iberian lynx

Antonio José Sáenz Albanés | Tesseract

Antonio José Sáenz Albanés | Technical Presentations Report

Diego de los Santos | Spanish-Portuguese cooperation for the conservation of Iberian biodiversity

Ester Serrão | Biodiversity and Function of underwater habitats



Centro Internacional de Investigacion e Innovacion en Biodiversidad

Oficina Técnica de apoyo a proyectos FEDER LifeWatch ERIC con Junta de Andalucía

Parque Natural Los Alcornocales

Valorizacion de servicios ecosistemicos mediante plataforma AI

Assessing marine biodiversity: MARBEFES project kick-off meeting

Marbefes project

MARBEFES (MARine Biodiversity and Ecosystem Functioning leading to Ecosystem Services) is the latest of LifeWatch ERIC’s related projects to launch, with the kick-off meeting taking place from 4–6 October in Sopot, Poland. The ambitious Horizon Europe project aims to evaluate and characterise the links between marine biodiversity, ecosystem functioning, ecosystem services and the resulting societal goods and benefits in coastal communities. The results will be captured in easy-to-use tools to help practitioners and policy to maximise the ecological value and optimise a sustainable socio-economic use of the marine system for current and future generations.

Representatives from all the MARBEFES project partners gathered in Sopot for a three-day kick-off meeting, involving general presentations of the project goals and expected results, including an overview of all the project Work Packages (WPs). On the first day of the meeting, as part of the general presentation of the project, LifeWatch ERIC CEO Christos Arvanitidis and International Initiatives & Projects Manager Cristina Huertas-Olivares illustrated LifeWatch ERIC’s leading role in in WP5 “Integration & Scenario”. The KOM also involved working group sessions to detail project partners’ involvement and interrelations between WPs to smooth further activities.

You can follow the MARBEFES project on Facebook and Twitter.

To learn more about the projects in which LifeWatch ERIC is involved, please visit our Related Projects page. 

Semantic Synergies at the OntoPortal Alliance Workshop

OntoPortal Alliance Workshop

At the end of September, members of the team from LifeWatch ERIC and LifeWatch Italy were in Montpellier, France, for the OntoPortal Alliance Workshop. The OntoPortal Alliance is a consortium of research and infrastructure teams (and one SME) dedicated to promoting semantic and ontology services—in science and more—based on the open, collaboratively developed OntoPortal open-source software. Teams in the Alliance develop and maintain several openly accessible semantic resource repositories. This includes BioPortal, the primary and historical source of OntoPortal code, but also AgroPortal, EcoPortal, MedPortal and MatPortal.

The 2022 OntoPortal Alliance Workshop’s main goal was to consolidate the OntoPortal Alliance organisation and shared agenda. External parties interested in re-using and/or participating to the development of OntoPortal, or more generally interested in the management of ontologies and other types of semantic resources (terminologies, vocabularies, thesauri, etc.) were also welcome at the event, which included an open tutorial on “Setting up your appliance” (for condensed technical information on how to quickly deploy your own ontology repository). 

During the session, the representatives from the anthologies repositories discussed how they plan to use the ontology repositories provided by the alliance. Nicola Fiore, Xeni Kechagioglou (LifeWatch ERIC) and laria Rosati (LifeWatch Italy) presented EcoPortal, the repository of semantic resources developed by LifeWatch ERIC and co-managed with the Italian national node, to brainstorm its next evolution together with the alliance partners. Such synergies are fundamental to ensuring the coordination of the development of semantic resources for scientific research.

In Seville for the EOSC Future Consortium Meeting

eosc future consortium meeting

From 28­–30 September, LifeWatch ERIC hosted a Consortium Meeting of the Horizon2020 project, EOSC Future, at la Casa de la Ciencia, in Seville. At 18 months into the project, the meeting served to review its execution thus far, as well as the next steps to be followed. All the consortium partners were represented, with 71 people attending in person and about 30 online. On the first day, the morning was dedicated to “WP6: Integration of Community Services and Products into EOSC”, which is led by LifeWatch ERIC, and involves the demonstration of EOSC value through Cross-domain Research Science Projects (10 Science Projects are involved in this WP) which will mobilise the research communities for widespread the use of EOSC resources.

Read more about the project’s ambitions:

EOSC Future will build on the existing baseline for the European Open Science Cloud to deliver a platform with a durable set of user-friendly components that are designed for the long haul. It will adopt a system-of-systems approach to the EOSC platform, linking together other research portals, resources and services to respond to the data needs of a wide range of researchers.

One way to think about EOSC is as a fully operational web of data and related services founded on FAIR protocols, principles and standards for accessing interoperable datasets. In practice, EOSC Future will work with key stakeholders to ensure a smooth user experience, developing:

  • EOSC core, the set of enabling services needed to operate the EOSC
  • EOSC exchange registering resources and services from research infrastructures, other EOSC projects and science clusters to the EOSC and integrating them with the EOSC core functionalities
  • the EOSC interoperability framework will provide guidelines for providers that want to integrate services or data into EOSC

EOSC Future will engage with users throughout the different development stages to make sure the EOSC matches researchers’ needs and is intuitive. It will also provide support and training to make sure users can make the most of the EOSC platform.

To learn more about the projects in which LifeWatch ERIC is involved, please visit our Related Projects page.

Agroecology Initiatives Gain Traction at the Smart Agrifood Summit

Smart Agrifood Summit

As with every year, LifeWatch ERIC is taking part in the annual Smart Agrifood Summit, Europe’s largest agrifood innovation and digitisation event, which is taking place this year from 29 – 30 September in Malaga, Spain. Attended by 3000 participants, 300 speakers, 200 start-ups and with over 50 countries represented, LifeWatch ERIC is in the perfect place to find and consolidate synergies; dozens of corporations, companies and entities highly involved in agrifood innovation and sustainability, such as Cajamar ADNAgroFood, held productive meetings with the infrastructure at its stand.

Notably at the event, Juan Miguel González-Aranda, LifeWatch ERIC Chief Technology Officer, presented “SmartfoodLifeWatch”, alongside José Manuel Ávila-Castuera, Rocío Moreno Domínguez and Daniel Caro Gómez. It is an initiative which measures the impact of agricultural, forestry and fishing activities on Andalusia’s biodiversity, powered in collaboration with the Andalusian Agrarian and Fisheries Management Agency (AGAPA) and researchers from the University of Cordoba.

The Indalo project was also presented at the Summit, which is coordinated with the Andalusian Institute for Research and Training in Agriculture, Food Fisheries and Ecological Production (IFAPA). This initiative studies Andalusian agricultural and fishing ecosystems through the creation of a network of observatories to monitor the impact of climate change and biodiversity. There are eight key focus ecosystems: olive groves, dried fruits, extensive herbaceous crops, intensive horticulture, red fruits, agriculture in the Lower Guadalquivir, dehesa and fishing reserves in the Guadalquivir. The network of observatories will be equipped with state-of-the-art measurement equipment, allowing real-time access to the information obtained by the sensors.

ECSA59: Showcasing the LifeWatch ERIC VRE

ECSA59

ECSA59 was the first face-to-face meeting of the Estuarine and Coastal Sciences Association in three years and attracted 460 participants to the Kursaal Conference Centre in Donostia-San Sebastián, Spain from 5–8 September 2022. Under the theme of ‘Using the best scientific knowledge for the sustainable management of estuaries and coastal seas’, scientists from all over the world discussed urbanisation, remote sensing, social ecology, governance, resilience to global warming, modelling food webs and much, much more.

Professor Angel Borja of the Basque Research and Technology Alliance (AZTI) as Conference Chair noted in his opening address how much things have changed in the 50 years since ECSA’s first papers were published in 1962. 150 years after Ferdinand Magellan’s expedition first circumnavigated the world, we are all now concerned that anthropogenic changes are impacting estuarine and coastal waters more than other domains, and the only way to set up sustainable management strategies is to provide decision-makers with the best scientific knowledge. 

Diverse aspects of that scientific knowledge were presented in five keynote plenaries and 44 parallel sessions over the four days of ECSA59. LifeWatch ERIC sponsored the conference and its stand proved very popular; early-career researchers in particular were keen to learn more about its open data, open-access Virtual Research Environment, the constantly-evolving result of the Infrastructure’s first internal project, which focuses on the topic of invasive alien species. The event concluded with field trips and the start of the AZTI Summer School. The next ECSA conference will be held in 2024.

Visitors to stand included: Mike Elliott, University of Hull; John Humphries, ECSA president-elect; Irene Prete, Università del Salento; Henrique Cabral, INRAE, France; Professor Omar Defeo, Universidad de la República de Uruguay; Patrick L. Friend, Deep-time Digital Earth; Irene Guarnieri, CNR-ISMAR; Nathalie Caill-Milly, Ifremer, France; Sonagnon Olivier Tokpanou, Université Laval, Quebec; Grzegorz Rozynski, Polish Academy of Sciences; Marina Dolbeth, University of Porto; and Heliana Teixeira, University of Aveiro.

LifeWatch Greece launches Marine Creatures Citizen Science platform for Nautilos project

Nautilos Marine Creatures

The Institute of Marine Biology, Biotechnology and Aquaculture at the Hellenic Centre for Marine Research –coordinator of the LifeWatch Greece node– has launched a new citizen science platform for the Horizon2020 project, Nautilos. Using the software Zooniverse, they have called their platform for Nautilos Marine Creatures, at the service of citizen scientists everywhere. The aim of the project is to help identify the sessile and often unnoticed benthic communities living on hard substrates using high-definition underwater images from artificial reefs, ports and natural sea caves. Morphological characters can be used to identify the taxonomic groups of these sophisticated marine communities.

If you would like to participate in this voluntary project and help out, please click here and get involved! A Tutorial and a Field Guide are available which will help you discover the project, be a Citizen Scientist and learn more about the marine environment.