The tripod frame: mooring acoustic receivers on the seabed

Acoustic telemetry

A new design to overcome the challenges of installing acoustic telemetry receivers on the seabed

Installing scientific instruments in a marine environment comes with many challenges. Equipment has to withstand the physical forces of tides, currents and storms. Researchers have to take into account the effects of biofouling, corrosion and human activities. Even access to the study site can pose its difficulties, as diving is limited by depth and weather conditions. Practical deployment mechanisms are therefore needed to sustain consistent data flows.

Acoustic telemetry enables the observation of animal movements in aquatic environments. Individual animals are fitted with a transmitter, relaying a signal that can be picked up by acoustic receivers. To facilitate a convenient installation of these instruments, the LifeWatch VLIZ team developed and tested a new design, mounting a receiver with an acoustic release on a tripod frame. This frame enables the recovery of all equipment and better yet, improves the quality of the data.

In a blog post published recently on Methods.blog, Jolien Goossens from Ghent University (and formerly LifeWatch VLIZ) tells us about the challenges of installing acoustic receivers on the seabed and this new tripod frame to overcome them. Click here for the full blog post and here for the scientific article published in the journal “Methods in Ecology and Evolution“. 

HIRING | 3 open vacancies

LifeWatch ERIC is looking to hire a:

  1. Scientific developer for essential biodiversity variables workflows 

LOCATION: LifeWatch ERIC Virtual Laboratory and Innovation Centre, Amsterdam, The Netherlands.

POSITION: Full-time, 24 months, with possible extension

DEADLINE for applications: 31 August 2020

Information is available on the website, in the Work with us section.

  1. Developer for Cloud-based Virtual Research Environments

LOCATION: LifeWatch ERIC Virtual Laboratory and Innovation Centre, Amsterdam, The Netherlands.

POSITION: Full-time, 24 months, with possible extension

DEADLINE for applications: 31 August 2020

Information is available on the website, in the Work with us section.

  1. Scientific developer for ecological applications of LiDAR Remote Sensing

LOCATION: LifeWatch ERIC Virtual Laboratory and Innovation Centre, Amsterdam, The Netherlands.

POSITION: Full-time, 24 months, with possible extension

DEADLINE for applications: 31 August 2020

Information is available on the website, in the Work with us section.

Towards the ENVRI Community Winter School

Data FAIRness Webinar Programme, July–September 2020

For two years in a row already, the ENVRI Community International Summer School on Data FAIRness has been assembling in Lecce, in the middle of the summer season, those researchers, experts and technical staff from different environmental and research infrastructures who want to deepen their knowledge on this topic. Unfortunately, the ongoing COVID-19 restrictions have ordained the postponement of the current edition until the beginning of next year, when the ‘ENVRI Community Winter School on Data FAIRness‘ will take place, still in Lecce. The delay has created the opportunity to enrich our training offerings on the subject, with a series of online webinars dedicated to data management, leading the way ‘Towards the ENVRI community Winter School’.

A Data FAIRness Webinar Programme featuring three webinars have been jointly organised by ENVRI-FAIR and LifeWatch ERIC from July to September 2020, with a focus on helping end users, particularly ENVRI-FAIR project partners and data centre staff, make the best use of their data. Registration for the webinars is free and anyone working in environmental and Earth science research is welcome to take part.

Under the heading of ‘Towards the ENVRI Community Winter School’, the online training series debuts on Monday 13 July 2020. The first broadcast is presented by Zhiming Zhao, from the University of Amsterdam, and will go to air from 9:30 to 12:00 CEST, providing ‘An introduction to Cloud Computing’. 

The second webinar on ‘Workflows Orchestration and Execution’ will follow on Tuesday 14 July, from 10:00-12:00, presented by Nicola Fiore and Lucia Vaira, both from LifeWatch ERIC. 

The third webcast is scheduled for 22 September and will feature Claudio D’Onofrio and Karolina Pantazatou, both from ICOS ERIC, with ‘An Introduction to Jupyter’.

Dates for the ENVRI Community Winter School on Data FAIRness, still to be hosted by the University of Salento in Lecce, will be available soon.

LifeWatch Polls #LWpoll

#LWpoll

Planned as part of the escalation of online communications, #LWpoll is a new initiative launched at the beginning of April 2020 by the infrastructure on Twitter to further connect with its scientific community.

The inspiration from the start was to understand the needs of scientists and to engage them in the development of the research infrastructure. Moreover, the initiative was thought of in an unprecedented time of our history, the COVID-19 pandemic, during which many scientists experienced limitations to their normal activity, and have had to adapt and find alternative solutions for their work. 

Now reaching its fifth edition, the LifeWatch Polls has been relaunching debates on hot topics and trying to understand the implications of the lockdown for ecologists and biologists in their field work, and if and how open access data repositories are used. Every poll is accompanied by a ‘Did You Know’ #DYK page with plenty of useful resources on the topics dealt with.

The #LWpoll on 6 May delved into the scale of biodiversity research, trying to catch a glimpse of which the most investigated domains are. In the spirit of two-way communication, quite apart from the many replies and Retweets, we’d welcome an email to suggest more topics. 

Previous polls:

LifeWatch Species Information Backbone

LifeWatch Species Information Backbone

The LifeWatch Species Information Backbone (LW-SIBb) facilitates the standardisation of species data and the (virtual) integration of many distributed biodiversity data repositories and operating facilities. Built on expert-validated and literature-based information, the LW-SIBb is structured in different open data systems for taxonomy, biogeography, genetics and species traits. It is the driving force behind the species information services of the Belgian LifeWatch.be e-Lab. Several taxonomic data systems, species registers, nomenclatures and taxonomy-related projects contribute to the LifeWatch Species Information Backbone. They all help to make the Species Information Backbone more complete, either by an active collaboration to fill gaps, opening their data system for data exchange or by making their data accessible through web services. Recently, two major milestones were reached within the Backbone. 

Firstly, the data rescue and secured continuation of the Global Compositae Database into the Aphia platform has become a fact. Although Compositae (or Asteraceae) are not even remotely linked to the marine environment, the Aphia database – the platform behind the World Register of Marine Species (WoRMS) – is suitable for managing non-marine taxa as well. Rather than letting this enormous resource of Compositae information run the risk of disappearing, the WoRMS Data Management Team undertook to transfer it to the Aphia platform, starting work in 2017. That transfer has now been completed.

Secondly, the Interim Register of Marine and Nonmarine Genera (IRMNG) is a compilation of genus names that covers both living and extinct biota in a single system to support taxonomic and other queries dealing with e.g. homonyms, authorities, parent-child relationships, spelling variations and distinctions between marine and non-marine or fossil and recent taxa. IRMNG provides  the most complete and consistent coverage of all kingdoms of life presently available in such a form and serves to illustrate the scope of a project for a more detailed survey of “all the genera of the world” as well as providing a comparison with existing lists and preliminary content that can be of value for the compilation of new lists. 

Like the Compositae Database, IRMNG, which was originally started and managed by the CSIRO in Australia, has also experienced a major data rescue and become an integrated part of the LifeWatch Species Information Backbone, accessible through its very own portal, and through the LifeWatch e-services.

Opportunity for early stage researchers

The European Training Network RIBES “River flow regulation, fish BEhaviour and Status”, funded by the European Commission under the EU Horizon 2020 programme Marie Skłodowska-Curie Actions Innovative Training Network (Grant no. 860800), announces 15 positions for Early Stage Researchers (ESRs) giving the opportunity of being awarded a Doctoral Degree, with innovative complementary training activities and attractive travel, laboratory and research opportunities.

RIBES ESRs will be trained by international leaders in the interdisciplinary field of Ecohydraulics to find innovative solutions for freshwater fish protection and river continuity restoration in anthropogenically altered rivers within a European consortium of universities, research institutions and companies in Italy, Sweden, Germany, UK, Estonia and Belgium in an excellent scientific environment with state-of-the-art technologies.

The 15 ESRs will have access to a number of laboratory and field facilities, modelling techniques,  experimental practices and instrumental technologies, to expand current understanding of fish bio-mechanical, behavioural and physiological processes, and to promote development of novel tools and management solutions in the area of freshwater fish protection, ameliorating passage of migratory fish species in regulated rivers.

Deadline: 31 May 2020
Euraxess call: https://euraxess.ec.europa.eu/jobs/510615
For further info contact Prof. Claudio Comoglio at:
coordinator[@]msca-ribes.eu

Data Protection Legislation Webinar

What are the main challenges awaiting Data Protection Legislation for health research? How is COVID-19 pandemic affecting this?

These are the themes at the heart of the International webinar hosted, today 5 May 2020, by Intelligence in Science (ISC), on health research in the era of General Data Protection Regulation, discussing how regulations might affect the coordination of global responses and how data transfers and processing can be achieved with safety and security.

Juan Miguel González-Aranda, Chief Technology Officer (CTO) and Executive Board member of ERIC FORUM, was invited to join the panel on GDPR/Blockchain, Federated Machine Learning and AI. This is in fact a central niche for the distributed e-Infrastructure which, under the lead of its CTO and thanks to the effort of all ICT staff, developed the LifeBlock platform, establishing LifeWatch ERIC as the first Environmental ESFRI using Blockchain technologies for engaging, tracking and securing biodiversity and ecosystem research resources & services provision.

The webinar featured contributions from National Institutes of Health, government departments and eminent universities, while topics ranged from GDPR and Data Transfers, their implication for Horizon Europe funding opportunities, and downstream data sharing for COVID-19 research. The webinar concluded with a World View, working towards recommendations for global alignment on data protection regulation for improved health outcomes in advance of the United Nations General Assembly in September 2020.

S4BioDiv 2020

3rd International Workshop on Semantics for Biodiversity

The S4BioDiv 3rd International Workshop on Semantics for Biodiversity, to be held in Bolzano, Italy, on 16 September, has issued a call for papers. Authors are invited to submit for inclusion topics related the application and development of semantic technologies to support research in the biodiversity and related domains. In the light of the coronavirus crisis, the conference may need to be held virtually. The final format of the conference will be determined in June.

Biodiversity deals with heterogeneous data and concepts generated from a large number of disciplines in order to build a coherent picture of the extent of life on earth. The presence of such a myriad of data resources makes integrative biodiversity research increasingly important, as well as challenging given the variety of ways in which data and information are produced and made available. The Semantic Web approach enhances data discoverability, sharing, interoperability and integration through a formalised conceptual environment providing common formats, standards, and terminological resources.

The S4BioDiv 2020 Workshop, which is supported by LifeWatch ERIC, aims to bring together computer scientists and biologists, working on Semantic Web approaches for biodiversity, ecology and related areas such as plant sciences, agronomy, agroecology or citizen science related to biodiversity. The goal is to exchange experiences, build a state of the art of realizations and challenges, and reuse and adapt solutions that have been proposed in other domains. The workshop focuses will be on presenting challenging issues and solutions for the design of high-quality biodiversity information systems leveraging Semantic Web techniques.

Click here for conference details and important dates.

Ten remarkable new marine species from 2019

As in previous years, the World Register of Marine Species (WoRMS) has again released the annual list of the top-ten marine species described by researchers during the year 2019 to coincide with World Taxonomist Appreciation day – 19 March!

Every day in labs, museums, out on fieldwork, taxonomists are busy collecting, cataloguing, identifying, comparing, describing and naming species new to science. Some 500 experts globally also contribute their valuable time to keeping the World Register of Marine Species up to date.

Today is a chance for us at WoRMS to thank all our editors for this important task. And we celebrate the work of taxonomists now with the WoRMS list of the top-ten marine species described in 2019 as nominated and voted for by taxonomists and journal editors!

This top ten list is just a small highlight of almost 2,000 fascinating new marine species discovered every year. Each of these marine animals has a story. This year the chosen species are in some cases particularly small, large, hidden or rather sparkly! We feature the unusual light-producing Christmas-Light Brittle Star and the Star-of-the-Sea Seed Shrimp; the tiny Brenner’s Bobtail Squid; cryptic Boring Amphipods and Green Rat Clingfish; and even a giant Mediterranean Branching Placozoan (well, giant for a placozoan…).

A list of the ‘Top Ten Species’ described from ALL habitats and taxa has been announced annually since 2008 by the State University of New York College of Environmental Science and Forestry (ESF). The oceans cover over 70% of the surface of our planet, and yet they still include the least explored regions. Although the ESF list often contains one or two marine species, we decided to pay homage to the ‘largest habitat on earth’ by producing our own list of the top marine species.

Go to the LifeWatch Belgium press release for details of these ten remarkable new marine species from 2019.

BEeS Conference postponed

BEes

In light of the growing concerns about COVID-19, in consideration of the limitations that various nation states have enforced to contain the pandemic, and in the light of guidance issued by national public health authorities and global health organisations, LifeWatch ERIC has decided to postpone the Biodiversity and Ecosystem e-Science (BEes) Conference, previously announced for 27-29 May 2020, in Ljubljana.

Given the current circumstances, we have concluded that it is no longer possible to plan and manage our conference to the usual standards in such a way as would sufficiently ensure the safety of participants.

We thank all our prospective participants for their trust and interest, but we issue this urgent warning NOT to make any travel or accommodation arrangements for this event.

Now is the time for us to put all our strengths together to fight this pandemic. New dates and details will be communicated as soon as possible.