Celebrating 15 Years of WoRMS

WoRMS 15 years

In 2007, the digitally available European Register of Marine Species (ERMS) expanded into a World Register of Marine Species, et voila, WoRMS was born. WoRMS is hosted by VLIZ, which is the national focal point for LifeWatch Belgium. In 2022, WoRMS can be seen as the number one authoritative classification and catalogue of marine names.

WoRMS is managed by a small Data Management Team (DMT) and an elected Steering Committee (SC), but the actual driving force behind the high-quality content of WoRMS is the Editorial Board. Completing and correcting WoRMS requires an enormous effort and is entirely dependent on the expertise and time of the editors. On top of that, it is a race against time as species are at risk of disappearing due to changing environmental conditions such as warming, pollution and acidification, before they are discovered.

To celebrate its 15th birthday and 15 years of collaboration with (taxonomic) experts all over the globe, WoRMS designed an exclusive t-shirt, with proceeds used to coordinate and disseminate funds to the WoRMS editors. With the funds raised, editors will be able to continue to fill gaps in coverage, expand the content and enhance the quality of taxonomic databases, attract interns and students to assist in the verification of taxonomic information, and purchase scientific literature.

And there’s more! Check out all the stories below on the LifeWatch Belgium website in celebration of 15 years of WoRMS!

2 – Get to know the WoRMS editors here!

3 – The growth of WoRMS over the years

4 – Developing the database

5 – Setting priorities to address gaps

6 – Behind the scenes

7 – Taxonomy – a science, an art, or a battleground?

8 – The challenge of author names

9 – Dark literature

10 – Type localities

11 – Endless possibilities

12 – Supporting the volunteers

13 – Beyond classical taxonomy

14 – Who uses WoRMS?

15 – Not reinventing the wheel

LifeWatch ERIC at the International Conference on Ecological Sciences in Metz

Metz

The SFE2, GFÖ & EEF International Conference on Ecological Sciences is taking place in Metz this week, from 21–25 November, organised by the LIEC (University of Lorraine, CNRS) and other labs in northeastern France working in the fields of ecology and evolution. LifeWatch ERIC is not only there with a stand, but is contributing to the agenda with cutting-edge topics in the field of biodiversity– namely, Non-indigenous and Invasive Species (NIS), considered one of the major threats to ecosystem functioning and one of the main drivers of biodiversity loss.

The European Infrastructure for Biodiversity and Ecosystem Research is putting on two events at the Conference on Ecological Sciences, a Workshop on 21 November to train scientists in the use of e-tools and resources to address key ecological questions on Non-indigenous and Invasive Species, and a Symposium on European Research Infrastructures (RIs).

The Workshop consists of a 4-hour training session in which interested attendees learn how to access and use LifeWatch ERIC Virtual Research Environments (VREs) from their personal computers, in which NIS case studies and workflows are embedded. The hands-on session is introduced by an interactive session to guide the attendees on their first approach to the VREs and related e-tools.

At the Symposium on 24 November, the discussion focuses on major scientific and societal challenges presented by biodiversity loss. Speakers are to present their RIs, then illustrate the services and facilities that these RIs can provide to address major threats for biodiversity (e.g., alien species, habitat degradation and fragmentation, etc.) and tackle climate change impacts affecting ecosystem functioning and services. It is therefore also an occasion to explore multidisciplinary expertise and synergies on these key topics.

Please follow the links for more information on the Workshop and the Symposium.

EU, Latin American, Caribbean and Ibero-American Community Meeting on Sustainable Ecosystem Management

Seville Meeting

This week, coordinators of national biodiversity information networks linked to GBIF, the Global Biodiversity Information Facility, providing the largest biodiversity data network in the world, will work together to accelerate the development and use of data technology networks and services, with the support of the EU and the UN. The meeting will be held in the Cartuja Science & Technology Park in Seville, home to the LifeWatch ERIC ICT-Core.

Understanding and coordinating biodiversity information is essential to respond to current social and environmental challenges and for the sustainable management of ecosystems. The strategic meeting, organised by LifeWatch ERIC, will bring together 30 experts and coordinators from 15 countries in Latin America, the Caribbean and Ibero-America: Argentina, Brazil, Chile, Colombia, Costa Rica, Cuba, Ecuador, Spain, Guatemala, Mexico, Nicaragua, Peru, Portugal, Uruguay and Venezuela, with the following aims:

1. Development of a common roadmap for the development and consolidation of (e-)Infrastructures and services that, from the perspective of e-Science, contribute to:

– the best sustainable management of the territory;

– the conservation of biodiversity and the natural environment;

– the achievement of the United Nations 2030 Sustainable Development Goals, in synergy with the EU Green Deal, EU Blue Growth, EU Biodiversity Strategy 2030 and EU Farm to Fork programmes, among others.

2. Exchange of experiences and capacities in handling issues and challenges common to national and international infrastructures, data, information and knowledge in (e-)biodiversity. A consensus document of conclusions including a EU-LAC Roadmap to co-develop, build and deploy through the financial support of the relevant calls (CYTED, GBIF, Cooperation Agencies, Horizon Europe, the NDICI, etc.)

3. The development of the above based on the paradigm of biogeographical regions in the CELAC area, through national cross-border collaboration between the states involved, in collaboration with the EU and the UN, e.g., through IKRI, the Indigenous Knowledge initiative Research Initiative, based on the aforementioned financial instruments.

Participating in the inaugural session of this initiative are Christos Arvanitidis, LifeWatch ERIC CEO; Juan Miguel González Aranda, CTO and Head of LifeWatch Spain; Joe Miller, GBIF Executive Secretary; Margarita Paneque Sosa, Institutional Coordinator of CSIC in Andalusia; Francisco Pando de la Hoz, representative of GBIF Spain; Melisa Ojeda, representative of GBIF nodes in CELAC area, and many others. Javier Castroviejo Bolívar, eminent Spanish biologist, UNESCO Consultant and former president of IberoMaB, the Network of National MaB Committees and Biosphere Reserves of Ibero-America and the Caribbean, will give a keynote address.

ALL-Ready Regional Workshop Hosted by LifeWatch ERIC: Accelerating the Agroecology Transition

ALL-Ready Workshop

LifeWatch ERIC is hosting a hybrid regional workshop on 2 November for the ALL-Ready Project, at its ICT-Core office in Seville, located in the Cartuja Science and Technology Park. It will be attended by the project partners and more than 50 experts from Spain, Portugal, Greece, Bulgaria and Italy, of which 50% of the attendees are members of the Andalusian agricultural and agri-food sectors. Presenting will be Consolación Vera, General Secretary of Agriculture, Livestock and Food of the Junta de Andalucía, and José Carlos Álvarez, Managing Director of AGAPA, the Andalusian Agricultural and Fisheries Management Agency, alongside representatives of workshop organisers LifeWatch ERIC (Juan Miguel González-Aranda, CTO) and INRAE (Heather McKhann, Muriel Mambrini-Doudet). The Ministry of Agriculture, Fisheries, Water and Rural Development of the Junta de Andalucía and its organic farming working group are also collaborating in the organisation of the event, to involve the Andalusian community of farmers (through the SmartFood project). They will present as a success story their experience promoting and stimulating the creation of Living Labs in Agroecology to enhance the presence of Andalusian farmers in the European Association. More information on the workshop and attendees here.

The important news from this Horizon2020 project is that the European Commission, through Horizon Europe, is designing the European Association to Accelerate the Transition of Agricultural Systems through Living Labs (collaborative workspaces) and Research Infrastructures in Agroecology, formed of the ALL-Ready project consortium and the experts in attendance at the workshop. The aim is over the next seven years to mobilise more than 500 million euros in order to bring the green and digital revolution to fruition in the agricultural sector, in line with the European Green Deal, the Farm to Fork Strategy, the European Biodiversity Strategy 2030, the new Common Agricultural Policy (CAP) and the UN SDGs. At the workshop, the participants will work together to propose the focus, maturity and financing of their initiatives, taking into account the practices and values ​​of ALL-Ready, to define their respective roles in the network. Another goal is to boost the participation of local agents from Southern Europe in the initiatives that will be organised by the Association.

For its part, LifeWatch ERIC has been designated by the European Commission as the Reference Research Infrastructure for the management of knowledge, data and infrastructure of Information Technology Association, and to help contribute to a green and digital revolution across Europe. To this end, the infrastructure is developing an innovative Virtual Research Environment based on its Tesseract and LifeBlock (which uses Blockchain) platforms, which will support the tokenisation of ecosystem services to enable ecosystem monitoring and tracking and CAP schemes based on agroecological practices and low-carbon agriculture. These developments carried out from Andalusia through its AstarteWatch network will be duly federated at a pan-European level through the LifeWatch ERIC e-Infrastructure.

In the two days following the regional workshop on 2 November, the ALL-Ready Annual Meeting morning will take place between the 13 entities of the project consortium, hosted by LifeWatch ERIC. Together, they will analyse the achievements made in the first phases of the project, define and plan the next steps, organise the growing involvement of all sectors linked to agroecology and model the training courses that contribute to systematising the legacy of this project and its continuity.

To learn more about the projects in which LifeWatch ERIC is involved, please see the Related Projects page.

One Biodiversity Knowledge Hub to link them all: the II BiCIKL General Assembly

BiCIKL General Assembly


The Horizon 2020 – funded Project BiCIKL, in which LifeWatch ERIC is a partner, has reached its halfway stage. The partners gathered in Plovdiv (Bulgaria) from 22 – 25 October for the Second General Assembly, brilliantly organised by Pensoft Publishers

The BiCIKL project will launch a new European community of key research infrastructures, researchers, citizen scientists and other stakeholders in the biodiversity and life sciences based on open science practices through access to data, tools and services. BiCIKL’s goal is to create a centralised place to connect all key biodiversity data by interlinking 15 research infrastructures and their databases. The 3-year European Commission-supported initiative kicked off in 2021 and involves 14 key natural history institutions from 10 European countries.

BiCIKL is keeping pace as expected (16 out of 48 deliverables have been submitted, 9 are in progress/under review and due in a few days, 21 out of 48 milestones have been achieved).

The hybrid format of the meeting enabled a wider range of participants, which resulted in robust discussions on the next steps of the project, such as the implementation of additional technical features of the FAIR Data Place (FAIR being an abbreviation for Findable, Accessible, Interoperable and Reusable). This online platform – the key and final product of the partnership and the BiCIKL initiative – is meant to provide scientists with all types of biodiversity data “at their fingertips”. 

This data includes information, such as detailed images, DNA, physiology and past studies concerning a specific species and its ‘relatives’, to name a few. Currently, the issue is that all those types of biodiversity data have so far been scattered across various databases, which in turn have been missing meaningful and efficient interconnectedness.

Additionally, the FAIR Data Place, developed within the BiCIKL project, is to give researchers access to plenty of training modules to guide them through the different services.

Halfway through the duration of BiCIKL, the project is at a turning point, where crucial discussions between the partners are playing a central role in the refinement of the FAIR Data Place design. Most importantly, they are tasked with ensuring that their technologies work efficiently with each other, in order to seamlessly exchange, update and share the biodiversity data every one of them is collecting and taking care of. 

By Year 3 of the BiCIKL project, the partners agree, when those infrastructures and databases become efficiently interconnected to each other, scientists studying the Earth’s biodiversity across the world will be in a much better position to build on existing research and improve the way and the pace at which nature is being explored and understood. At the end of the day, knowledge is the stepping stone for the preservation of biodiversity and humankind itself.

“Needless to say, it’s an honour and a pleasure to be the coordinator of such an amazing team spanning as many as 14 partnering natural history and biodiversity research institutions from across Europe, but also involving many global long-year collaborators and their infrastructures, such as Wikidata, GBIF, TDWG, Catalogue of Life to name a few. I see our meeting in Plovdiv as a practical demonstration of our eagerness and commitment to tackle the long-standing and technically complex challenge of breaking down the silos in the biodiversity data domain. It is time to start building freeways between all biodiversity data, across (digital) space, time and data types. After the last three days that we spent together in inspirational and productive discussions, I am as confident as ever that we are close to providing scientists with much more straightforward routes to not only generate more biodiversity data, but also build on the already existing knowledge to form new hypotheses and information ready to use by decision- and policy-makers. One cannot stress enough how important the role of biodiversity data is in preserving life on Earth. These data are indeed the groundwork for all that we know about the natural world” – said BiCIKL’s project coordinator Prof. Lyubomir Penev, CEO and founder of Pensoft, a scholarly publisher and technology provider company. 

“The point is: do we want an integrated structure or do we prefer federated structures?” – says Christos Arvanitidis, LifeWatch ERIC – “What are the pros and cons of the two options? It’s essential to keep the community united and allied because we can’t afford any information loss and the stakeholders should feel at home with the Project and the Biodiversity Knowledge Hub.”

“We are a brand new community, and we are in the middle of the growth process” – says Joe Miller, GBIF– “We would like to already have answers, but it’s good to have this kind of robust discussion to build on a good basis. We must find the best solution to have linkages between infrastructures and be able to maintain them in the future because the BKH is the location to gather the community around best practices, data and guidelines on how to use the BiCIKL services… In order to engage even more partners to fill the eventual gaps in our knowledge.”

“BiCIKL is leading data infrastructure communities through some exciting and important developments”, says Guy Cochrane, EMBL-EBI. “In an era of biodiversity change and loss, leveraging scientific data fully will allow the world to catalogue what we have now, to track and understand how things are changing and to build the tools that we will use to conserve or remediate. The challenge is that the data come from many streams – molecular biology, taxonomy, natural history collections, biodiversity observation – that need to be connected and intersected to allow scientists and others to ask real questions about the data. In its first year, BiCIKL has made some key advances to rise to this challenge.”

“As a partner, we, at  Biodiversity Information Standards – TDWG, are very enthusiastic that our standards are implemented in BiCIKL and serve to link biodiversity data.  We know that joining forces and working together is crucial to building efficient infrastructures and sharing knowledge”, says Deborah Paul, chair of the Biodiversity Information Standards-TDWG.

The project will go on with the first Round Table of experts in December and the publications of the projects who participated in the Open Call and will be founded (https://bicikl-project.eu/open-call-projects) at the beginning of the next year.

To learn more about projects in which LifeWatch ERIC is involved, please visit our Related Projects page.

Marine Regions Launches Extended Continental Shelves Dataset

Extended Continental Shelves Dataset

Marine Regions, the database managed by focal point of LifeWatch Belgium, VLIZ, is proud to have launched the first version of the Extended Continental Shelves dataset. This latest dataset contains the portion of the continental shelf that extends beyond 200 Nautical Miles. Similar to the Exclusive Economic Zones dataset, it consists of both the outer limits of these areas and their polygon representations. Marine Regions is a standard list of marine georeferenced place names and areas.

How does it work?

The Marine Regions Gazetteer is a standard list of marine georeferenced place names and areas. Beside this list, shapefiles of Maritime Boundaries are created and/or shared. The Marine Regions Gazetteer provides the link between the species registers and the species occurrence databases in the LifeWatch Species Information Backbone. Various web services of Marine Regions are part of the LifeWatch Belgium e-lab.

Please contact info@marineregions.org if your organisation is interested in contributing to Marine Regions.

More detailed information about the dataset can be found in the original article on the LifeWatch Belgium website.

LifeWatch Greece integrated into GOOS Biology and Ecosystems GeoNode

GeoNode BioEco Portal

The LifeWatch Greece national node, led by HCMR, hosts a large and continuously updated database with biodiversity data collected from monitoring projects throughout the Mediterranean (MedOBIS). As of September, it has been integrated as a layer of GeoNode BioEco Portal as a monitoring project for Greek Bioversity.

The GOOS BioEco Portal is a publicly available tool to monitor the status of the marine biological observing system. The GEONODE is the back-end interface where registered users can upload, edit and manage their monitoring program details including which EOVs (Essential Ocean Variables) and EBVs (Essential Biodiversity Variables) are monitored; spatial and temporal information; status of the program; data availability and licences; standardisation and protocols; as well as links to applications, tools and outputs based on the collected observations. This GeoNode is hosted and maintained by the secretariat of the Ocean Biodiversity Information System (OBIS) based at the IOC Project Office for IODE in Ostend, Belgium as a service to support the Global Ocean Observing System Biology and Ecosystem Panel.

You can find the original article on the LifeWatch Greece website.

Second open access data paper published in the Biodiversity Data Journal

procambarus clarkii

The “LifeWatch ERIC Collection of Data and Services Papers” published in the Biodiversity Data Journal is dedicated to the resources and assets developed, upgraded and used during the implementation of the Internal Joint Initiative (IJI), our flagship project focused non-indigenous and invasive species (NIS). Following the debut paper “An individual-based dataset of carbon and nitrogen isotopic data of Callinectes sapidus in invaded Mediterranean waters” (Di Muri et al.) in January, a second open-access data paper in this series was published on 20 October 2022, entitled “Individual and population-scale carbon and nitrogen isotopic values of Procambarus clarkii in invaded freshwater ecosystems” (Di Muri et al.).

Freshwater ecosystems are amongst the most threatened habitats on Earth; nevertheless, they support about 9.5% of known global biodiversity while covering less than 1% of the globe’s surface. One such threat are NIS such as the Louisiana crayfish, Procambarus clarkii. Crayfish species are widely-distributed freshwater invaders and, while alien species introductions occur mostly accidentally, alien crayfish are often released deliberately into new areas for commercial purposes. Native to the south United States and north Mexico, P. clarkii has been introduced in Europe, Asia and Africa, having negative impacts in the majority of invaded habitats where it became dominant, meaning it had become essential to evaluate the ecological consequences and quantify its impact.

The paper presents two geo-referenced datasets of isotopic signatures of the Louisiana crayfish and its animal and vegetable prey in invaded inland and brackish waters. To the best of the authors’ knowledge, this effort represents the first attempt to collate in standardised datasets the sparse isotopic information of P. clarkii available in literature. The datasets provide a spatially explicit resolution of its trophic ecology and can be used to address a variety of ecological questions concerning its ecological impact on recipient aquatic food webs.

The research was carried out within the context of the IJI, more specifically the ‘Crustaceans Workflow’, one of the validation cases used to develop an interdisciplinary Virtual Research Environment that utilises disruptive technologies to deal with the impacts of NIS on native species, genetic diversity, habitats, ecosystem functioning and services, and to inform current practices in environmental management and policy implementation. Stay tuned for the next paper!


ACCESS THE PAPER HERE

LifeWatch ERIC in Meeting on Disruptive Technologies

Disruptive technologies

Tomorrow morning, on Wednesday 19 October, LifeWatch ERIC will have the opportunity to meet and establish relationships with other creators and promoters of disruptive technologies, at the online B2B meeting organised by PTE Disruptive of the Association of Science and Technology Parks of Spain (APTE) focused on opportunities in the biotech sector (in Spanish).

LifeWatch ERIC CTO, Juan Miguel González-Aranda, will present in a slot from 10:40 – 11:00 CEST. In his presentation, he will talk about the range of disruptive technologies used by LifeWatch ERIC – the virtual infrastructure available to anyone who wishes to support research on biodiversity and the valorisation of ecosystem services with reliable data. 

Other participants include: Felipe Romera, president of Malaga TechPark and APTE, who will present the Spanish Platform of Disruptive Technologies; María Angeles Ferré, responsible for scientific-technical thematic programmes at the State Research Agency, who will talk about the aid programmes; Gabriel Anzaldi Varas, director of technological scientific development at EURECAT, who will speak about digital-bio technological convergence and its applications; and Raquel Álvarez Fernández, head of statistics and intelligence at the Spanish Association of Biocompanies (AseBio), who will discuss business opportunities in the biotech sector. 

The meeting will also see presentations from three company representatives with practical examples on the use of disruptive technologies: Exheus CEO, Teresa Tarragó; Zymvol Biomodeling SL CTO Maria Fátima Lucas; and Honey.Ai COO Iratxe Perales. APTE is funded by Ministry of Science and Innovation of Spain through the AIE.

Interested persons are invited to register for the event using the form (in Spanish).

Bilateral meetings will be held after the presentations and will not be streamed.

Fortifying Spanish-Portuguese Cooperation on Technology for Research at IBERGRID 2022

IBERGRID 2022

IBERGRID 2022, the 11th Iberian Grid Conference, took place 10–13 October at the University of Algarve in Faro, Portugal. IBERGRID stands for the Iberian Grid Structure, federating computing and data resources across the Iberian area to support research and innovation. The theme of the conference was “Delivering Innovative Computing and Data Services for Research”, and LifeWatch ERIC had a strong presence at the event, with a presentation “EOSC Activities in the Environmental Sciences”  from ICT-Core e-Infrastructure Operations Coordinator Antonio José Sáenz on behalf of CEO Christos Arvanitidis and CTO Juan Miguel González-Aranda, as part of the EOSC tripartite event which took place on day 1, and a two-part workshop on “IBERLifeWatch” – focusing on a good practices approach for scientific, technology and innovation communities and on funding opportunities for Spanish-Portuguese cooperation on day 2 and day 4.

During the IBERLifeWatch workshop, LifeWatch ERIC was able to highlight its collaboration several prestigious research entities, with engaging presentations from representatives from FCTCSICMIRRI ERIC, the University of Huelva, the University of Granada, the FCCN UnitLIPGBIF, the Royal Botanical Garden of Madrid, the Spanish government, the Junta de Andalucía, the Interreg Spain-Portugal programme, the LIFE programme, Estacão Biológica de MértolaUniversity of PortoLeuphana Universität LüneburgADRAL, the University of Aveiro, the University of Minho and many more, as well as coordinators of the Spanish and Portuguese nodes of LifeWatch ERIC itself. State-of-the-art LifeWatch ERIC tools were presented, such as LifeBlock and Tesseract, alongside important ERDF projects in the region involving the participation of the infrastructure, such as SmartFood and Smart EcoMountains, as well as wide-reaching agroecology initiatives such as ALL-Ready. To learn about the technology underpinning these projects, please see the presentations below.

LifeWatch ERIC would like to thank event organisers University of AlgarveLIPINCD and CSIC. The Iberian Peninsula is a biodiversity hotspot and it is key that synergistic initiatives and projects such as those mentioned during the meeting are maintained and expanded, and IBERGRID 2022 provided the perfect opportunity to acknowledge and reinforce cross-border collaboration.

To see photos from the event, please see our gallery.

Presentations from the IBERLifeWatch workshop are available below:


José Manuel Ávila | Innovation on Agroecology to support a transition to more sustainable and resilient agrifood systems

Kety Cáceres Falcón & Sofía Vaz | Funding European opportunities for ES-PT collaboration

Estação Biológica de Mértola | Presentation

Juan Miguel González-Aranda | IBERLifeWatch: A scientific, technology and innovation Communities of good practices approach

Pablo Guerrero, Jaime Lobo & Emilio de Leon | Improving the environmental monitoring cycle, remote sensing & space technologies

Rohaifa Khaldi | Application of Artificial Intelligence in the study of Ecosystems

Emilio de Leon | Early detection of invasive species using metabarcoding

Joaquín López | LifeBlock and semantic environment status and roadmap

Carlos Javier Navarro | Remote Sensing in ecology and conservation of mountain systems

Nuria Pistón | Ecosystem Services modelling in mountain systems

José Rodriguez Quintero | University of Huelva cross-border projects

Teresa del Rey | Improving connectivity between populations of the endangered Iberian lynx

Antonio José Sáenz Albanés | Tesseract

Antonio José Sáenz Albanés | Technical Presentations Report

Diego de los Santos | Spanish-Portuguese cooperation for the conservation of Iberian biodiversity

Ester Serrão | Biodiversity and Function of underwater habitats




Centro Internacional de Investigacion e Innovacion en Biodiversidad

Oficina Técnica de apoyo a proyectos FEDER LifeWatch ERIC con Junta de Andalucía

Parque Natural Los Alcornocales

Valorizacion de servicios ecosistemicos mediante plataforma AI